Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39463216..39465859-chr13:39480202..39481912,2	MCF-7	breast:
2	chr13:39479950..39482154-chr13:39486542..39488534,2	K562	blood:

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10454604	0.80[EUR][1000 genomes]
rs10467462	0.80[EUR][1000 genomes]
rs10467463	0.80[EUR][1000 genomes]
rs11840412	0.80[EUR][1000 genomes]
rs11840417	0.80[EUR][1000 genomes]
rs11843227	0.80[EUR][1000 genomes]
rs11843956	0.80[EUR][1000 genomes]
rs4280107	0.80[EUR][1000 genomes]
rs4397982	0.80[EUR][1000 genomes]
rs4424787	0.80[EUR][1000 genomes]
rs4494416	0.80[EUR][1000 genomes]
rs4494417	0.80[EUR][1000 genomes]
rs4544122	0.80[EUR][1000 genomes]
rs4640053	0.80[EUR][1000 genomes]
rs60205158	0.92[ASN][1000 genomes]
rs6563652	0.80[EUR][1000 genomes]
rs7317233	0.80[EUR][1000 genomes]
rs7317892	0.80[EUR][1000 genomes]
rs7321477	0.80[EUR][1000 genomes]
rs7338854	0.80[EUR][1000 genomes]
rs7992792	0.80[EUR][1000 genomes]
rs7993992	0.80[EUR][1000 genomes]
rs7994024	0.80[EUR][1000 genomes]
rs7995466	1.00[ASN][1000 genomes]
rs9315631	0.80[EUR][1000 genomes]
rs9315633	0.80[EUR][1000 genomes]
rs9566373	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9566374	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[ASN][1000 genomes]
rs9566375	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9566380	1.00[CEU][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap]
rs9576640	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576643	1.00[ASN][1000 genomes]
rs9576644	0.86[ASN][1000 genomes]
rs9576645	0.82[AFR][1000 genomes]
rs9603466	1.00[ASN][1000 genomes]
rs9603482	0.80[EUR][1000 genomes]
rs9603483	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39480400-39484600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr13:39480400-39486000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:39480600-39484600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr13:39480600-39484600	Weak transcription	HMEC	breast
5	chr13:39480600-39484600	Weak transcription	NHEK	skin

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