Variant report

Variant	rs9576645
Chromosome Location	chr13:39489738-39489739
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:38214540..38215112-chr13:39489657..39490374,2	MCF-7	breast:
2	chr13:39244540..39245431-chr13:39489325..39490251,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10454604	0.99[ASN][1000 genomes]
rs10467462	0.97[ASN][1000 genomes]
rs10467463	0.99[ASN][1000 genomes]
rs11840412	0.99[ASN][1000 genomes]
rs11840417	0.97[ASN][1000 genomes]
rs11843227	0.98[ASN][1000 genomes]
rs11843956	0.99[ASN][1000 genomes]
rs4280107	0.99[ASN][1000 genomes]
rs4315232	0.99[ASN][1000 genomes]
rs4397982	0.99[ASN][1000 genomes]
rs4424787	0.99[ASN][1000 genomes]
rs4494416	0.99[ASN][1000 genomes]
rs4494417	0.99[ASN][1000 genomes]
rs4544122	0.99[ASN][1000 genomes]
rs4591006	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4640053	0.99[ASN][1000 genomes]
rs6563652	0.99[ASN][1000 genomes]
rs67819958	0.98[ASN][1000 genomes]
rs7317233	0.99[ASN][1000 genomes]
rs7317892	0.99[ASN][1000 genomes]
rs7321477	0.99[ASN][1000 genomes]
rs7338854	0.99[ASN][1000 genomes]
rs73449995	0.98[ASN][1000 genomes]
rs7992792	0.99[ASN][1000 genomes]
rs7993992	0.98[ASN][1000 genomes]
rs7994024	0.99[ASN][1000 genomes]
rs7995466	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9315628	0.99[ASN][1000 genomes]
rs9315630	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9315631	0.99[ASN][1000 genomes]
rs9315632	0.98[ASN][1000 genomes]
rs9315633	0.99[ASN][1000 genomes]
rs9548558	0.97[ASN][1000 genomes]
rs9566372	0.82[AFR][1000 genomes]
rs9566374	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9566375	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9566376	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9566380	1.00[CEU][hapmap]
rs9576643	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9576644	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9576647	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9594308	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9594309	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9594311	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9594312	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9603454	0.81[EUR][1000 genomes]
rs9603458	0.83[EUR][1000 genomes]
rs9603466	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9603471	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9603472	0.98[ASN][1000 genomes]
rs9603475	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9603476	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9603477	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9603478	1.00[EUR][1000 genomes]
rs9603482	0.98[ASN][1000 genomes]
rs9603483	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39485200-39489800	Weak transcription	HMEC	breast
2	chr13:39488400-39490000	Enhancers	Liver	Liver
3	chr13:39488800-39489800	Weak transcription	HepG2	liver
4	chr13:39489400-39489800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr13:39489400-39489800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:39489400-39489800	Enhancers	Brain Hippocampus Middle	brain
7	chr13:39489400-39489800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr13:39489400-39489800	Enhancers	Brain Substantia Nigra	brain
9	chr13:39489400-39490000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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