Variant report
| Variant | rs9315628 |
|---|---|
| Chromosome Location | chr13:39497781-39497782 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:39497714..39500454-chr13:39501817..39503959,2 | K562 | blood: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-STOML3-6 | chr13:39497650-39497878 | NONHSAT033286 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:49)
| rs_ID | r2[population] |
|---|---|
| rs10454604 | 1.00[ASN][1000 genomes] |
| rs10467462 | 0.98[ASN][1000 genomes] |
| rs10467463 | 1.00[ASN][1000 genomes] |
| rs11840412 | 1.00[ASN][1000 genomes] |
| rs11840417 | 0.98[ASN][1000 genomes] |
| rs11843227 | 0.99[ASN][1000 genomes] |
| rs11843956 | 1.00[ASN][1000 genomes] |
| rs4072678 | 0.80[ASN][1000 genomes] |
| rs4280107 | 1.00[ASN][1000 genomes] |
| rs4315232 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4319626 | 0.81[ASN][1000 genomes] |
| rs4397982 | 1.00[ASN][1000 genomes] |
| rs4424787 | 1.00[ASN][1000 genomes] |
| rs4494416 | 1.00[ASN][1000 genomes] |
| rs4494417 | 1.00[ASN][1000 genomes] |
| rs4544122 | 1.00[ASN][1000 genomes] |
| rs4591006 | 1.00[ASN][1000 genomes] |
| rs4640053 | 1.00[ASN][1000 genomes] |
| rs6563652 | 1.00[ASN][1000 genomes] |
| rs67819958 | 0.99[ASN][1000 genomes] |
| rs7317233 | 1.00[ASN][1000 genomes] |
| rs7317892 | 1.00[ASN][1000 genomes] |
| rs7321477 | 1.00[ASN][1000 genomes] |
| rs7338854 | 1.00[ASN][1000 genomes] |
| rs73449995 | 0.99[ASN][1000 genomes] |
| rs7992792 | 1.00[ASN][1000 genomes] |
| rs7993992 | 0.99[ASN][1000 genomes] |
| rs7994024 | 1.00[ASN][1000 genomes] |
| rs9315630 | 1.00[ASN][1000 genomes] |
| rs9315631 | 1.00[ASN][1000 genomes] |
| rs9315632 | 0.99[ASN][1000 genomes] |
| rs9315633 | 1.00[ASN][1000 genomes] |
| rs9548558 | 0.98[ASN][1000 genomes] |
| rs9566375 | 0.89[ASN][1000 genomes] |
| rs9566376 | 0.98[ASN][1000 genomes] |
| rs9576644 | 0.89[ASN][1000 genomes] |
| rs9576645 | 0.99[ASN][1000 genomes] |
| rs9576647 | 1.00[ASN][1000 genomes] |
| rs9594308 | 0.97[ASN][1000 genomes] |
| rs9594309 | 1.00[ASN][1000 genomes] |
| rs9594311 | 1.00[ASN][1000 genomes] |
| rs9594312 | 1.00[ASN][1000 genomes] |
| rs9603471 | 0.99[ASN][1000 genomes] |
| rs9603472 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9603475 | 0.98[ASN][1000 genomes] |
| rs9603476 | 1.00[ASN][1000 genomes] |
| rs9603477 | 1.00[ASN][1000 genomes] |
| rs9603482 | 0.99[ASN][1000 genomes] |
| rs9603483 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754118 | chr13:39347702-40222644 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
