Variant report

Variant	rs9576647
Chromosome Location	chr13:39500980-39500981
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10454604	1.00[ASN][1000 genomes]
rs10467462	0.98[ASN][1000 genomes]
rs10467463	1.00[ASN][1000 genomes]
rs11840412	1.00[ASN][1000 genomes]
rs11840417	0.98[ASN][1000 genomes]
rs11843227	0.99[ASN][1000 genomes]
rs11843956	1.00[ASN][1000 genomes]
rs4072678	0.80[ASN][1000 genomes]
rs4280107	1.00[ASN][1000 genomes]
rs4315232	1.00[ASN][1000 genomes]
rs4319626	0.81[ASN][1000 genomes]
rs4397982	1.00[ASN][1000 genomes]
rs4424787	1.00[ASN][1000 genomes]
rs4494416	1.00[ASN][1000 genomes]
rs4494417	1.00[ASN][1000 genomes]
rs4544122	1.00[ASN][1000 genomes]
rs4591006	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4640053	1.00[ASN][1000 genomes]
rs6563652	1.00[ASN][1000 genomes]
rs67819958	0.99[ASN][1000 genomes]
rs7317233	1.00[ASN][1000 genomes]
rs7317892	1.00[ASN][1000 genomes]
rs7321477	1.00[ASN][1000 genomes]
rs7338854	1.00[ASN][1000 genomes]
rs73449995	0.99[ASN][1000 genomes]
rs7992792	1.00[ASN][1000 genomes]
rs7993992	0.99[ASN][1000 genomes]
rs7994024	1.00[ASN][1000 genomes]
rs7995466	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9315628	1.00[ASN][1000 genomes]
rs9315630	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9315631	1.00[ASN][1000 genomes]
rs9315632	0.99[ASN][1000 genomes]
rs9315633	1.00[ASN][1000 genomes]
rs9548558	0.98[ASN][1000 genomes]
rs9566374	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9566375	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9566376	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576643	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9576644	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9576645	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9594308	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9594309	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9594311	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9594312	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603466	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9603471	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9603472	0.99[ASN][1000 genomes]
rs9603475	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9603476	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603477	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603478	0.94[EUR][1000 genomes]
rs9603482	0.99[ASN][1000 genomes]
rs9603483	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39499200-39501400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr13:39499600-39501400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr13:39500000-39501000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr13:39500400-39503400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:39500600-39503800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr13:39500800-39503200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr13:39500800-39503600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links