Variant report

Variant	rs4591006
Chromosome Location	chr13:39507113-39507114
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39505076..39507328-chr13:39564629..39567532,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133115	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10454604	1.00[ASN][1000 genomes]
rs10467462	0.98[ASN][1000 genomes]
rs10467463	1.00[ASN][1000 genomes]
rs11840412	1.00[ASN][1000 genomes]
rs11840417	0.98[ASN][1000 genomes]
rs11843227	0.99[ASN][1000 genomes]
rs11843956	1.00[ASN][1000 genomes]
rs4072678	0.80[ASN][1000 genomes]
rs4280107	1.00[ASN][1000 genomes]
rs4315232	1.00[ASN][1000 genomes]
rs4319626	0.81[ASN][1000 genomes]
rs4397982	1.00[ASN][1000 genomes]
rs4424787	1.00[ASN][1000 genomes]
rs4494416	1.00[ASN][1000 genomes]
rs4494417	1.00[ASN][1000 genomes]
rs4544122	1.00[ASN][1000 genomes]
rs4640053	1.00[ASN][1000 genomes]
rs6563652	1.00[ASN][1000 genomes]
rs67819958	0.99[ASN][1000 genomes]
rs7317233	1.00[ASN][1000 genomes]
rs7317892	1.00[ASN][1000 genomes]
rs7321477	1.00[ASN][1000 genomes]
rs7338854	1.00[ASN][1000 genomes]
rs73449995	0.99[ASN][1000 genomes]
rs7992792	1.00[ASN][1000 genomes]
rs7993992	0.99[ASN][1000 genomes]
rs7994024	1.00[ASN][1000 genomes]
rs7995466	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9315628	1.00[ASN][1000 genomes]
rs9315630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9315631	1.00[ASN][1000 genomes]
rs9315632	0.99[ASN][1000 genomes]
rs9315633	1.00[ASN][1000 genomes]
rs9548558	0.98[ASN][1000 genomes]
rs9566374	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9566375	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9566376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576643	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9576644	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9576645	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576647	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9594308	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9594309	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9594311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9594312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603454	0.81[EUR][1000 genomes]
rs9603458	0.83[EUR][1000 genomes]
rs9603466	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9603471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9603472	0.99[ASN][1000 genomes]
rs9603475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9603476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603478	1.00[EUR][1000 genomes]
rs9603482	0.99[ASN][1000 genomes]
rs9603483	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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