Variant report

Variant	rs9603454
Chromosome Location	chr13:39431458-39431459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39430468..39433096-chr13:39447129..39449184,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs4591006	0.81[EUR][1000 genomes]
rs7335362	1.00[CHB][hapmap]
rs9315630	0.81[EUR][1000 genomes]
rs9566374	0.81[EUR][1000 genomes]
rs9566375	0.81[EUR][1000 genomes]
rs9566376	0.81[EUR][1000 genomes]
rs9576643	0.81[EUR][1000 genomes]
rs9576644	0.81[EUR][1000 genomes]
rs9576645	0.81[EUR][1000 genomes]
rs9594308	0.81[EUR][1000 genomes]
rs9594309	0.81[EUR][1000 genomes]
rs9594311	0.81[EUR][1000 genomes]
rs9594312	0.81[EUR][1000 genomes]
rs9603439	1.00[CHB][hapmap]
rs9603440	1.00[CHB][hapmap]
rs9603442	1.00[CHB][hapmap]
rs9603458	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603466	0.81[EUR][1000 genomes]
rs9603471	0.81[EUR][1000 genomes]
rs9603475	0.81[EUR][1000 genomes]
rs9603476	0.81[EUR][1000 genomes]
rs9603477	0.81[EUR][1000 genomes]
rs9603478	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603493	1.00[ASN][1000 genomes]
rs9603498	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39416200-39450200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:39419000-39449800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr13:39419200-39452600	Weak transcription	Fetal Intestine Large	intestine
4	chr13:39420800-39454600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr13:39421000-39433400	Weak transcription	Fetal Stomach	stomach
6	chr13:39421600-39442600	Weak transcription	Fetal Intestine Small	intestine
7	chr13:39422000-39434400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr13:39422200-39443200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:39423400-39442600	Weak transcription	Liver	Liver
10	chr13:39424200-39457800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:39424800-39449600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr13:39425200-39433400	Weak transcription	Fetal Kidney	kidney
13	chr13:39425800-39431800	Weak transcription	Pancreas	Pancrea
14	chr13:39426200-39435400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr13:39427000-39436400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr13:39430400-39436200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr13:39430600-39458000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr13:39430600-39462400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr13:39430800-39433600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr13:39431000-39439400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr13:39431200-39432200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:39431400-39431600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr13:39431400-39431800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr13:39431400-39432200	Enhancers	Gastric	stomach
25	chr13:39431400-39432600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr13:39431400-39434800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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