Variant report

Variant	rs9603458
Chromosome Location	chr13:39440313-39440314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs41286947	1.00[ASN][1000 genomes]
rs4591006	0.83[EUR][1000 genomes]
rs9315630	0.83[EUR][1000 genomes]
rs9566374	0.83[EUR][1000 genomes]
rs9566375	0.83[EUR][1000 genomes]
rs9566376	0.83[EUR][1000 genomes]
rs9576643	0.83[EUR][1000 genomes]
rs9576644	0.83[EUR][1000 genomes]
rs9576645	0.83[EUR][1000 genomes]
rs9594308	0.83[EUR][1000 genomes]
rs9594309	0.83[EUR][1000 genomes]
rs9594311	0.83[EUR][1000 genomes]
rs9594312	0.83[EUR][1000 genomes]
rs9603454	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603466	0.83[EUR][1000 genomes]
rs9603471	0.83[EUR][1000 genomes]
rs9603475	0.83[EUR][1000 genomes]
rs9603476	0.83[EUR][1000 genomes]
rs9603477	0.83[EUR][1000 genomes]
rs9603478	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603493	1.00[ASN][1000 genomes]
rs9603498	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39416200-39450200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:39419000-39449800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr13:39419200-39452600	Weak transcription	Fetal Intestine Large	intestine
4	chr13:39420800-39454600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr13:39421600-39442600	Weak transcription	Fetal Intestine Small	intestine
6	chr13:39422200-39443200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:39423400-39442600	Weak transcription	Liver	Liver
8	chr13:39424200-39457800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:39424800-39449600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr13:39430600-39458000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr13:39430600-39462400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr13:39432200-39458200	Weak transcription	Gastric	stomach
13	chr13:39432600-39468600	Weak transcription	Psoas Muscle	Psoas
14	chr13:39433800-39451000	Weak transcription	Fetal Kidney	kidney
15	chr13:39433800-39456600	Weak transcription	Fetal Stomach	stomach
16	chr13:39434400-39442600	Weak transcription	Pancreas	Pancrea
17	chr13:39434400-39446200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr13:39434800-39448800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr13:39436000-39445200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr13:39436000-39457800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr13:39436600-39442400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr13:39438800-39445200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr13:39438800-39450000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr13:39439400-39441600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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