Variant report

Variant	rs9594309
Chromosome Location	chr13:39490438-39490439
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10454604	1.00[ASN][1000 genomes]
rs10467462	0.98[ASN][1000 genomes]
rs10467463	1.00[ASN][1000 genomes]
rs11840412	1.00[ASN][1000 genomes]
rs11840417	0.98[ASN][1000 genomes]
rs11843227	0.99[ASN][1000 genomes]
rs11843956	1.00[ASN][1000 genomes]
rs4072678	0.80[ASN][1000 genomes]
rs4280107	1.00[ASN][1000 genomes]
rs4315232	1.00[ASN][1000 genomes]
rs4319626	0.81[ASN][1000 genomes]
rs4397982	1.00[ASN][1000 genomes]
rs4424787	1.00[ASN][1000 genomes]
rs4494416	1.00[ASN][1000 genomes]
rs4494417	1.00[ASN][1000 genomes]
rs4544122	1.00[ASN][1000 genomes]
rs4591006	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4640053	1.00[ASN][1000 genomes]
rs6563652	1.00[ASN][1000 genomes]
rs67819958	0.99[ASN][1000 genomes]
rs7317233	1.00[ASN][1000 genomes]
rs7317892	1.00[ASN][1000 genomes]
rs7321477	1.00[ASN][1000 genomes]
rs7338854	1.00[ASN][1000 genomes]
rs73449995	0.99[ASN][1000 genomes]
rs7992792	1.00[ASN][1000 genomes]
rs7993992	0.99[ASN][1000 genomes]
rs7994024	1.00[ASN][1000 genomes]
rs7995466	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9315628	1.00[ASN][1000 genomes]
rs9315630	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9315631	1.00[ASN][1000 genomes]
rs9315632	0.99[ASN][1000 genomes]
rs9315633	1.00[ASN][1000 genomes]
rs9548558	0.98[ASN][1000 genomes]
rs9566374	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9566375	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9566376	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9566380	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9576643	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9576644	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9576645	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576647	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9594308	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9594311	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9594312	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603454	0.81[EUR][1000 genomes]
rs9603458	0.83[EUR][1000 genomes]
rs9603466	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9603471	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9603472	0.99[ASN][1000 genomes]
rs9603475	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9603476	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603477	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603478	1.00[EUR][1000 genomes]
rs9603482	0.99[ASN][1000 genomes]
rs9603483	1.00[ASN][1000 genomes]
rs9603498	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39490000-39495000	Weak transcription	HMEC	breast

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