Variant report
| Variant | rs4072678 |
|---|---|
| Chromosome Location | chr13:39516702-39516703 |
| allele | A/C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10454604 | 0.80[ASN][1000 genomes] |
| rs10467463 | 0.80[ASN][1000 genomes] |
| rs11839539 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11840412 | 0.80[ASN][1000 genomes] |
| rs11843956 | 0.80[ASN][1000 genomes] |
| rs4280107 | 0.80[ASN][1000 genomes] |
| rs4315232 | 0.80[ASN][1000 genomes] |
| rs4319626 | 0.99[ASN][1000 genomes] |
| rs4397982 | 0.80[ASN][1000 genomes] |
| rs4424787 | 0.80[ASN][1000 genomes] |
| rs4494416 | 0.80[ASN][1000 genomes] |
| rs4494417 | 0.80[ASN][1000 genomes] |
| rs4544122 | 0.80[ASN][1000 genomes] |
| rs4591006 | 0.80[ASN][1000 genomes] |
| rs4640053 | 0.80[ASN][1000 genomes] |
| rs6563652 | 0.80[ASN][1000 genomes] |
| rs7317233 | 0.80[ASN][1000 genomes] |
| rs7317892 | 0.80[ASN][1000 genomes] |
| rs7321477 | 0.80[ASN][1000 genomes] |
| rs7338854 | 0.80[ASN][1000 genomes] |
| rs7992792 | 0.80[ASN][1000 genomes] |
| rs7994024 | 0.80[ASN][1000 genomes] |
| rs9315628 | 0.80[ASN][1000 genomes] |
| rs9315630 | 0.80[ASN][1000 genomes] |
| rs9315631 | 0.80[ASN][1000 genomes] |
| rs9315632 | 0.81[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9315633 | 0.80[ASN][1000 genomes] |
| rs9548553 | 0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9548558 | 0.80[ASN][1000 genomes] |
| rs9566380 | 0.88[JPT][hapmap] |
| rs9576647 | 0.80[ASN][1000 genomes] |
| rs9594309 | 0.80[ASN][1000 genomes] |
| rs9594311 | 0.80[ASN][1000 genomes] |
| rs9594312 | 0.80[ASN][1000 genomes] |
| rs9603476 | 0.80[ASN][1000 genomes] |
| rs9603477 | 0.80[ASN][1000 genomes] |
| rs9603483 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754118 | chr13:39347702-40222644 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv1053818 | chr13:39512274-39533011 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs4072678 | GPR114 | trans | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:39514800-39524200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
