Variant report
| Variant | rs9603478 |
|---|---|
| Chromosome Location | chr13:39506406-39506407 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:39505076..39507328-chr13:39564629..39567532,2 | MCF-7 | breast: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-STOML3-6 | chr13:39505744-39506569 | NONHSAT033286 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000133115 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs41286947 | 1.00[ASN][1000 genomes] |
| rs4591006 | 1.00[EUR][1000 genomes] |
| rs7995466 | 0.94[EUR][1000 genomes] |
| rs9315630 | 1.00[EUR][1000 genomes] |
| rs9566374 | 1.00[EUR][1000 genomes] |
| rs9566375 | 1.00[EUR][1000 genomes] |
| rs9566376 | 1.00[EUR][1000 genomes] |
| rs9576643 | 1.00[EUR][1000 genomes] |
| rs9576644 | 1.00[EUR][1000 genomes] |
| rs9576645 | 1.00[EUR][1000 genomes] |
| rs9576647 | 0.94[EUR][1000 genomes] |
| rs9594308 | 1.00[EUR][1000 genomes] |
| rs9594309 | 1.00[EUR][1000 genomes] |
| rs9594311 | 1.00[EUR][1000 genomes] |
| rs9594312 | 1.00[EUR][1000 genomes] |
| rs9603454 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9603458 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9603466 | 1.00[EUR][1000 genomes] |
| rs9603471 | 1.00[EUR][1000 genomes] |
| rs9603475 | 1.00[EUR][1000 genomes] |
| rs9603476 | 1.00[EUR][1000 genomes] |
| rs9603477 | 1.00[EUR][1000 genomes] |
| rs9603493 | 1.00[ASN][1000 genomes] |
| rs9603498 | 1.00[ASN][1000 genomes] |
| rs9603501 | 1.00[ASN][1000 genomes] |
| rs9603505 | 1.00[ASN][1000 genomes] |
| rs9603506 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754118 | chr13:39347702-40222644 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
