Variant report

Variant	rs9603475
Chromosome Location	chr13:39502096-39502097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39497714..39500454-chr13:39501817..39503959,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10454604	0.98[ASN][1000 genomes]
rs10467462	0.97[ASN][1000 genomes]
rs10467463	0.98[ASN][1000 genomes]
rs11840412	0.98[ASN][1000 genomes]
rs11840417	0.97[ASN][1000 genomes]
rs11843227	0.97[ASN][1000 genomes]
rs11843956	0.98[ASN][1000 genomes]
rs4280107	0.98[ASN][1000 genomes]
rs4315232	0.98[ASN][1000 genomes]
rs4397982	0.98[ASN][1000 genomes]
rs4424787	0.98[ASN][1000 genomes]
rs4494416	0.98[ASN][1000 genomes]
rs4494417	0.98[ASN][1000 genomes]
rs4544122	0.98[ASN][1000 genomes]
rs4591006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4640053	0.98[ASN][1000 genomes]
rs6563652	0.98[ASN][1000 genomes]
rs67819958	0.97[ASN][1000 genomes]
rs7317233	0.98[ASN][1000 genomes]
rs7317892	0.98[ASN][1000 genomes]
rs7321477	0.98[ASN][1000 genomes]
rs7338854	0.98[ASN][1000 genomes]
rs73449995	0.97[ASN][1000 genomes]
rs7992792	0.98[ASN][1000 genomes]
rs7993992	0.97[ASN][1000 genomes]
rs7994024	0.98[ASN][1000 genomes]
rs7995466	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9315628	0.98[ASN][1000 genomes]
rs9315630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9315631	0.98[ASN][1000 genomes]
rs9315632	0.97[ASN][1000 genomes]
rs9315633	0.98[ASN][1000 genomes]
rs9548558	0.97[ASN][1000 genomes]
rs9566374	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9566375	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9566376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9576643	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9576644	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9576645	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9576647	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9594308	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9594309	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9594311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9594312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9603454	0.81[EUR][1000 genomes]
rs9603458	0.83[EUR][1000 genomes]
rs9603466	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9603471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9603472	0.97[ASN][1000 genomes]
rs9603476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9603477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9603478	1.00[EUR][1000 genomes]
rs9603482	0.97[ASN][1000 genomes]
rs9603483	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39500400-39503400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:39500600-39503800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:39500800-39503200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr13:39500800-39503600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr13:39501000-39503600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr13:39501200-39503800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr13:39501400-39503600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr13:39501400-39503600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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