Variant report

Variant	rs9568620
Chromosome Location	chr13:52096901-52096902
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52096223..52098756-chr13:52108625..52111484,2	MCF-7	breast:
2	chr13:52088586..52090282-chr13:52095773..52098356,2	MCF-7	breast:
3	chr13:52025069..52031067-chr13:52092672..52100320,19	MCF-7	breast:
4	chr13:52095912..52097471-chr13:52377855..52379456,2	MCF-7	breast:
5	chr13:52021229..52031054-chr13:52088479..52100505,23	MCF-7	breast:
6	chr13:52026880..52029766-chr13:52094473..52098011,4	K562	blood:
7	chr13:52093115..52097623-chr13:52157437..52160245,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224892	Chromatin interaction
ENSG00000102796	Chromatin interaction
ENSG00000139668	Chromatin interaction
ENSG00000231856	Chromatin interaction
ENSG00000102786	Chromatin interaction
ENSG00000236778	Chromatin interaction

rs_ID	r²[population]
rs12430796	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9563061	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568621	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52090000-52097400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:52093200-52097000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr13:52093200-52097200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr13:52093400-52097000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr13:52093400-52097000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr13:52093400-52097000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:52093400-52097200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr13:52093800-52097000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr13:52093800-52097800	Enhancers	HepG2	liver
10	chr13:52094200-52097200	Weak transcription	NHLF	lung
11	chr13:52094600-52097200	Weak transcription	NHDF-Ad	bronchial
12	chr13:52094600-52099000	Weak transcription	HSMM	muscle
13	chr13:52094800-52097000	Weak transcription	NHEK	skin
14	chr13:52094800-52097000	Weak transcription	Osteobl	bone
15	chr13:52094800-52097200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr13:52094800-52097200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr13:52094800-52097200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr13:52094800-52097200	Weak transcription	Fetal Muscle Leg	muscle
19	chr13:52094800-52097400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr13:52094800-52098200	Enhancers	A549	lung
21	chr13:52094800-52098800	Weak transcription	NH-A	brain
22	chr13:52094800-52100800	Enhancers	Hela-S3	cervix
23	chr13:52095000-52097200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr13:52095000-52097200	Weak transcription	Fetal Thymus	thymus
25	chr13:52095000-52097200	Weak transcription	HMEC	breast
26	chr13:52095200-52097000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr13:52095200-52097200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr13:52095200-52097200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr13:52095400-52097200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr13:52095600-52097200	Weak transcription	Primary T cells from cord blood	blood
31	chr13:52096000-52097200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr13:52096000-52097200	Weak transcription	Liver	Liver
33	chr13:52096200-52097200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr13:52096200-52097400	Weak transcription	Lung	lung
35	chr13:52096200-52098800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr13:52096600-52098800	Enhancers	Primary hematopoietic stem cells	blood
37	chr13:52096600-52100600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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