The 2.0 version of rSNPBase
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Variant report
Variant
rs12430796
Chromosome Location
chr13:52089236-52089237
allele
G/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:3)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:3 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr13:52025633..52029037-chr13:52088583..52091491,5
MCF-7
breast:
2
chr13:52021229..52031054-chr13:52088479..52100505,23
MCF-7
breast:
3
chr13:52088586..52090282-chr13:52095773..52098356,2
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
ENSG00000224892
Chromatin interaction
ENSG00000102786
Chromatin interaction
ENSG00000236778
Chromatin interaction
Extended variants information (count: 5 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:5)
rs_ID
r
2
[population]
rs12430341
0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs745374
0.81[AMR][1000 genomes]
rs9563061
0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9568620
0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9568621
0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links