Variant report

Variant	rs745374
Chromosome Location	chr13:52132057-52132058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52131962..52135088-chr13:52156352..52158320,3	MCF-7	breast:
2	chr13:52024546..52028811-chr13:52131702..52137649,7	MCF-7	breast:
3	chr13:52126960..52128462-chr13:52130679..52132908,2	MCF-7	breast:
4	chr13:52026353..52029018-chr13:52131265..52135290,3	MCF-7	breast:
5	chr13:52023304..52026235-chr13:52130476..52133449,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236778	Chromatin interaction
ENSG00000224892	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1024271	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12430796	0.81[AMR][1000 genomes]
rs12585249	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17075902	1.00[ASW][hapmap];0.85[CHB][hapmap];0.80[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes]
rs3803201	1.00[ASW][hapmap];0.85[CHB][hapmap];0.80[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];1.00[AFR][1000 genomes]
rs3825410	1.00[ASW][hapmap];0.85[CHB][hapmap];0.80[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];1.00[AFR][1000 genomes]
rs4075628	1.00[ASW][hapmap];0.95[CHB][hapmap];0.80[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4625625	0.85[CHB][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap]
rs4941703	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4943005	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4943009	0.85[GIH][hapmap]
rs7328589	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs9316547	0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs9316548	0.94[ASN][1000 genomes]
rs9316551	0.81[CHB][hapmap]
rs9563061	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[TSI][hapmap]
rs9563063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9563065	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9563066	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9563067	1.00[ASW][hapmap];0.85[CHB][hapmap];0.80[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap]
rs9568621	1.00[CEU][hapmap]
rs9568633	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9568644	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9568647	0.81[AMR][1000 genomes]
rs9568650	0.85[CHB][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap]
rs9805172	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52127000-52134000	Weak transcription	GM12878-XiMat	blood
2	chr13:52127200-52132400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:52130200-52134400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:52130600-52132200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr13:52130800-52132200	Flanking Active TSS	NHEK	skin
6	chr13:52131000-52132200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:52131000-52132200	Enhancers	Left Ventricle	heart
8	chr13:52131000-52132200	Enhancers	Right Atrium	heart
9	chr13:52131000-52132600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr13:52131000-52138800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr13:52131400-52133400	Enhancers	Esophagus	oesophagus
12	chr13:52131600-52132200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr13:52131600-52133800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr13:52131800-52132200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr13:52131800-52132200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr13:52131800-52132200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr13:52131800-52132200	Flanking Active TSS	Osteobl	bone
18	chr13:52131800-52132400	Flanking Active TSS	Hela-S3	cervix
19	chr13:52131800-52132600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr13:52131800-52132600	Flanking Active TSS	HMEC	breast
21	chr13:52131800-52132800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr13:52131800-52132800	Enhancers	HSMM	muscle
23	chr13:52131800-52133200	Enhancers	HSMMtube	muscle
24	chr13:52132000-52132200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr13:52132000-52132200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr13:52132000-52132200	Enhancers	Pancreas	Pancrea
27	chr13:52132000-52132200	Flanking Active TSS	HepG2	liver
28	chr13:52132000-52132200	Flanking Active TSS	NH-A	brain
29	chr13:52132000-52132200	Flanking Active TSS	NHDF-Ad	bronchial
30	chr13:52132000-52132400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr13:52132000-52132400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr13:52132000-52132400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr13:52132000-52132400	Flanking Active TSS	A549	lung
34	chr13:52132000-52132400	Flanking Active TSS	NHLF	lung
35	chr13:52132000-52133600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr13:52132000-52134200	Enhancers	Monocytes-CD14+_RO01746	blood

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