Variant report

Variant	rs4075628
Chromosome Location	chr13:52173686-52173687
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52167123..52169021-chr13:52171538..52173989,2	MCF-7	breast:
2	chr13:52025241..52027687-chr13:52171016..52174536,3	MCF-7	breast:
3	chr13:52156993..52158950-chr13:52173357..52176105,2	K562	blood:
4	chr13:52026237..52028363-chr13:52172790..52175398,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102786	Chromatin interaction
ENSG00000236778	Chromatin interaction
ENSG00000224892	Chromatin interaction
ENSG00000242893	Chromatin interaction
ENSG00000139668	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1024271	0.85[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12585249	0.85[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17075902	1.00[ASW][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3803201	1.00[ASW][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.85[MKK][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3825410	1.00[ASW][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4625625	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[ASN][1000 genomes]
rs4941703	0.95[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4941710	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4943005	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4943009	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[GIH][hapmap];0.95[EUR][1000 genomes]
rs4943018	0.89[ASN][1000 genomes]
rs7328589	0.86[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes]
rs7333623	0.90[ASN][1000 genomes]
rs745374	1.00[ASW][hapmap];0.95[CHB][hapmap];0.80[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7986066	0.89[ASN][1000 genomes]
rs9316547	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs9316548	0.87[ASN][1000 genomes]
rs9316551	0.85[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9563061	1.00[ASW][hapmap]
rs9563063	0.95[CHB][hapmap];0.82[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9563065	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9563066	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563067	1.00[ASW][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.85[MKK][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9568633	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9568644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568647	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9568649	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9568650	0.90[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.89[ASN][1000 genomes]
rs9568653	0.85[ASN][1000 genomes]
rs9568658	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9805172	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52159600-52174600	Weak transcription	Spleen	Spleen
2	chr13:52160200-52181400	Weak transcription	Thymus	Thymus
3	chr13:52160400-52177000	Weak transcription	Right Ventricle	heart
4	chr13:52162800-52180200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr13:52163200-52182600	Weak transcription	Ovary	ovary
6	chr13:52165400-52174200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr13:52165600-52188600	Weak transcription	Fetal Stomach	stomach
8	chr13:52165800-52179000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr13:52166000-52175800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:52166000-52176400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr13:52166000-52181200	Weak transcription	NH-A	brain
12	chr13:52166200-52175600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr13:52166200-52178800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr13:52166200-52181200	Weak transcription	NHLF	lung
15	chr13:52166400-52176200	Weak transcription	Osteobl	bone
16	chr13:52166400-52181200	Weak transcription	Hela-S3	cervix
17	chr13:52167600-52179800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr13:52168400-52177400	Weak transcription	Lung	lung
19	chr13:52168400-52194400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr13:52168600-52174400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr13:52168600-52177600	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr13:52169200-52174000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr13:52169400-52174600	Weak transcription	Aorta	Aorta
24	chr13:52169600-52174400	Weak transcription	K562	blood
25	chr13:52169800-52174400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr13:52169800-52174400	Weak transcription	Pancreas	Pancrea
27	chr13:52169800-52174600	Weak transcription	Left Ventricle	heart
28	chr13:52169800-52176000	Weak transcription	Primary T cells from cord blood	blood
29	chr13:52169800-52179600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr13:52169800-52187000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr13:52169800-52188600	Weak transcription	Esophagus	oesophagus
32	chr13:52169800-52188600	Weak transcription	Gastric	stomach
33	chr13:52170000-52175000	Enhancers	HepG2	liver
34	chr13:52170800-52174800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr13:52171000-52174200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr13:52171000-52176800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr13:52171000-52180000	Weak transcription	Psoas Muscle	Psoas
38	chr13:52171200-52174200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr13:52171200-52174600	Weak transcription	Fetal Intestine Large	intestine
40	chr13:52171200-52175800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr13:52171200-52175800	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr13:52171200-52176200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr13:52171200-52176200	Weak transcription	A549	lung
44	chr13:52171400-52174200	Weak transcription	NHEK	skin
45	chr13:52171400-52177400	Weak transcription	HMEC	breast
46	chr13:52171600-52174400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr13:52171800-52175600	Weak transcription	HSMM	muscle
48	chr13:52171800-52177000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr13:52171800-52179000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr13:52172200-52174000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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