Variant report

Variant	rs9568633
Chromosome Location	chr13:52121728-52121729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1024271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12585249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4075628	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4941703	0.89[ASN][1000 genomes]
rs4943005	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs745374	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9316547	0.85[ASN][1000 genomes]
rs9316548	0.86[ASN][1000 genomes]
rs9563063	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9563065	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9563066	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9568621	0.81[AMR][1000 genomes]
rs9568644	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9805172	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52114400-52122800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr13:52116800-52123000	Weak transcription	Hela-S3	cervix
3	chr13:52116800-52132000	Weak transcription	Pancreas	Pancrea
4	chr13:52117000-52126200	Weak transcription	Adipose Nuclei	Adipose
5	chr13:52117200-52122600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr13:52117200-52122800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr13:52117200-52122800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr13:52117200-52122800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr13:52117600-52122800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr13:52121200-52124200	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links