Variant report

No.	Distal block	Cell Line	Cell type
1	chr13:52112849..52115667-chr13:52128292..52129894,2	MCF-7	breast:
2	chr13:52124143..52125807-chr13:52127264..52129826,2	K562	blood:
3	chr13:52126960..52128462-chr13:52130679..52132908,2	MCF-7	breast:
4	chr13:52125996..52128858-chr13:52157695..52159658,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139668	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1024271	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12428478	0.80[YRI][hapmap]
rs12585249	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17075902	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs3803201	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs3825410	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs4075628	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4625625	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs4941703	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4943005	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7328589	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs745374	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9316547	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9316548	0.94[ASN][1000 genomes]
rs9316551	0.85[CHB][hapmap]
rs9563063	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9563065	0.88[ASN][1000 genomes]
rs9563066	0.87[ASN][1000 genomes]
rs9563067	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs9568633	0.91[ASN][1000 genomes]
rs9568644	0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs9568650	0.84[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52116800-52132000	Weak transcription	Pancreas	Pancrea
2	chr13:52123800-52129200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:52123800-52129400	Weak transcription	NHEK	skin
4	chr13:52124000-52129400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr13:52124000-52130200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:52124200-52131600	Weak transcription	HepG2	liver
7	chr13:52124400-52132000	Weak transcription	A549	lung
8	chr13:52126600-52131600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr13:52127000-52134000	Weak transcription	GM12878-XiMat	blood
10	chr13:52127200-52131800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr13:52127200-52132400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr13:52127400-52130600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr13:52128200-52131000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr13:52128200-52131200	Weak transcription	Monocytes-CD14+_RO01746	blood

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