Variant report

Variant	rs9568621
Chromosome Location	chr13:52098519-52098520
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:52096223..52098756-chr13:52108625..52111484,2	MCF-7	breast:
2	chr13:52097892..52100856-chr13:52116371..52118761,2	MCF-7	breast:
3	chr13:52071373..52072937-chr13:52097109..52099094,2	MCF-7	breast:
4	chr13:52025069..52031067-chr13:52092672..52100320,19	MCF-7	breast:
5	chr13:52026690..52027276-chr13:52097819..52098600,2	MCF-7	breast:
6	chr13:52098497..52100314-chr13:52149330..52151605,2	MCF-7	breast:
7	chr13:52021229..52031054-chr13:52088479..52100505,23	MCF-7	breast:
8	chr13:52027100..52027814-chr13:52097840..52098667,2	Hela-S3	cervix:
9	chr13:52093545..52096468-chr13:52097107..52099629,3	MCF-7	breast:
10	chr13:52097469..52099363-chr13:52157629..52159742,2	MCF-7	breast:
11	chr13:52097331..52099871-chr13:52124586..52126544,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000224892	Chromatin interaction
ENSG00000236778	Chromatin interaction
ENSG00000102786	Chromatin interaction
ENSG00000139668	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1024271	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12430341	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12430796	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12585249	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4943005	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs745374	1.00[CEU][hapmap]
rs9563061	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9563063	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs9568620	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9568633	0.81[AMR][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52094600-52099000	Weak transcription	HSMM	muscle
2	chr13:52094800-52098800	Weak transcription	NH-A	brain
3	chr13:52094800-52100800	Enhancers	Hela-S3	cervix
4	chr13:52096200-52098800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr13:52096600-52098800	Enhancers	Primary hematopoietic stem cells	blood
6	chr13:52096600-52100600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:52097000-52098600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr13:52097000-52098800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr13:52097000-52098800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr13:52097000-52098800	Enhancers	Dnd41	blood
11	chr13:52097000-52100400	Enhancers	NHEK	skin
12	chr13:52097000-52100600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr13:52097000-52100600	Enhancers	Osteobl	bone
14	chr13:52097200-52098600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr13:52097200-52098600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr13:52097200-52098800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr13:52097200-52099200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr13:52097200-52099200	Enhancers	Liver	Liver
19	chr13:52097200-52099400	Enhancers	Primary T cells from cord blood	blood
20	chr13:52097200-52099800	Enhancers	HMEC	breast
21	chr13:52097200-52100000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr13:52097200-52100600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr13:52097200-52100600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr13:52097200-52100800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr13:52097400-52098600	Enhancers	GM12878-XiMat	blood
26	chr13:52097400-52099800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr13:52097600-52098600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr13:52097600-52098600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr13:52097600-52098800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr13:52097600-52098800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr13:52097600-52098800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr13:52097600-52099000	Weak transcription	NHDF-Ad	bronchial
33	chr13:52097600-52108600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr13:52097800-52099000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr13:52098000-52098800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr13:52098000-52099000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr13:52098000-52099000	Weak transcription	NHLF	lung
38	chr13:52098200-52099000	Flanking Active TSS	A549	lung
39	chr13:52098200-52099200	Enhancers	K562	blood
40	chr13:52098200-52099400	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr13:52098200-52100800	Enhancers	H1 Cell Line	embryonic stem cell
42	chr13:52098200-52101000	Enhancers	HepG2	liver
43	chr13:52098200-52106800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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