Variant report

Variant	rs9568653
Chromosome Location	chr13:52266926-52266927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17075902	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3803201	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3825410	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4075628	0.85[ASN][1000 genomes]
rs4625625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4941710	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4943018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7328589	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7328695	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7333623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7986066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9563065	0.84[ASN][1000 genomes]
rs9563066	0.85[ASN][1000 genomes]
rs9563067	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9568644	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9568647	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9568649	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9568650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9568658	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832612	chr13:52176983-52362525	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52234000-52277800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr13:52247200-52277400	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr13:52247600-52300200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr13:52247600-52300200	Weak transcription	Fetal Lung	lung
5	chr13:52249400-52307600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr13:52251200-52269600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr13:52254400-52270200	Weak transcription	Esophagus	oesophagus
8	chr13:52254400-52273200	Weak transcription	Pancreas	Pancrea
9	chr13:52254600-52293000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr13:52254600-52301800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr13:52255400-52273200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:52255600-52273200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr13:52256400-52277800	Weak transcription	HSMMtube	muscle
14	chr13:52258000-52273400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr13:52258000-52280400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr13:52258600-52271600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr13:52258600-52273400	Weak transcription	NHEK	skin
18	chr13:52258800-52270600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr13:52259200-52278000	Weak transcription	Primary T cells from cord blood	blood
20	chr13:52259400-52273200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr13:52259400-52277800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr13:52261000-52273800	Weak transcription	Primary B cells from cord blood	blood
23	chr13:52262800-52269400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr13:52263400-52273200	Weak transcription	Gastric	stomach
25	chr13:52263400-52295600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr13:52264000-52270400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:52264000-52277600	Weak transcription	NH-A	brain
28	chr13:52264000-52300000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr13:52264200-52269600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr13:52264200-52270200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr13:52264200-52273000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr13:52264200-52277600	Weak transcription	HepG2	liver
33	chr13:52264200-52277800	Weak transcription	HMEC	breast
34	chr13:52264200-52277800	Weak transcription	HSMM	muscle
35	chr13:52264200-52278000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr13:52264200-52280800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links