Variant report

Variant	rs9569117
Chromosome Location	chr13:55436739-55436740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1116255	0.97[EUR][1000 genomes]
rs1118523	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11617736	0.98[ASN][1000 genomes]
rs12584689	0.97[EUR][1000 genomes]
rs12873684	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1350912	0.98[ASN][1000 genomes]
rs1462200	0.95[ASN][1000 genomes]
rs1580271	0.98[ASN][1000 genomes]
rs1580272	0.95[EUR][1000 genomes]
rs1585548	0.96[ASN][1000 genomes]
rs1599561	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1599562	0.97[EUR][1000 genomes]
rs1841708	0.96[ASN][1000 genomes]
rs1841710	0.98[ASN][1000 genomes]
rs1960972	0.98[ASN][1000 genomes]
rs1993776	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1993777	0.86[EUR][1000 genomes]
rs2006684	0.86[EUR][1000 genomes]
rs2050972	0.81[EUR][1000 genomes]
rs2126413	0.97[EUR][1000 genomes]
rs2169478	0.93[EUR][1000 genomes]
rs2409557	0.96[EUR][1000 genomes]
rs2409584	0.97[EUR][1000 genomes]
rs28644181	0.97[EUR][1000 genomes]
rs35242816	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36027061	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4307840	0.92[ASN][1000 genomes]
rs4885494	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4885495	0.97[ASN][1000 genomes]
rs6561806	0.94[EUR][1000 genomes]
rs6561807	0.86[EUR][1000 genomes]
rs6561808	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71439545	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71439546	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7318838	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7320465	0.86[EUR][1000 genomes]
rs7326046	0.96[ASN][1000 genomes]
rs7326733	0.92[EUR][1000 genomes]
rs7335368	0.93[ASN][1000 genomes]
rs8000818	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8001846	0.97[EUR][1000 genomes]
rs931014	0.92[ASN][1000 genomes]
rs931015	0.92[ASN][1000 genomes]
rs9527299	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9527301	0.85[ASN][1000 genomes]
rs9536897	0.98[ASN][1000 genomes]
rs9536906	0.87[ASN][1000 genomes]
rs9536908	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9536909	0.92[ASN][1000 genomes]
rs9536910	0.92[EUR][1000 genomes]
rs9536911	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9536919	0.84[ASN][1000 genomes]
rs9536920	0.83[ASN][1000 genomes]
rs9536925	0.84[ASN][1000 genomes]
rs9563251	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9563252	0.89[EUR][1000 genomes]
rs9563255	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9563265	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9569095	0.85[CEU][hapmap]
rs9569107	0.89[EUR][1000 genomes]
rs9569129	0.97[EUR][1000 genomes]
rs9569130	0.97[EUR][1000 genomes]
rs9569134	0.97[EUR][1000 genomes]
rs9569136	0.87[ASN][1000 genomes]
rs9569150	0.85[ASN][1000 genomes]
rs9569152	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9569153	0.81[EUR][1000 genomes]
rs9569157	0.84[EUR][1000 genomes]
rs9597059	0.98[ASN][1000 genomes]
rs9597060	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv561702	chr13:55086271-55808127	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1048599	chr13:55143426-55476042	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1051640	chr13:55143426-55478547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv561703	chr13:55143754-55473732	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1052745	chr13:55159674-55459161	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv541779	chr13:55159674-55459161	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv900096	chr13:55363417-55508485	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv561704	chr13:55395253-55764633	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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