Variant report
| Variant | rs9576652 |
|---|---|
| Chromosome Location | chr13:39513666-39513667 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10870726 | 0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs36098057 | 0.81[ASN][1000 genomes] |
| rs3935275 | 0.82[ASN][1000 genomes] |
| rs3935279 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4492928 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4499117 | 0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4608213 | 0.87[EUR][1000 genomes] |
| rs4943618 | 0.90[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7321316 | 0.93[EUR][1000 genomes] |
| rs7986935 | 0.80[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9315635 | 0.99[ASN][1000 genomes] |
| rs9532302 | 0.81[ASN][1000 genomes] |
| rs9548541 | 0.83[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs9548543 | 0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9548547 | 1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap] |
| rs9566378 | 0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9576641 | 0.81[ASN][1000 genomes] |
| rs9576642 | 0.81[ASN][1000 genomes] |
| rs9576653 | 0.86[EUR][1000 genomes] |
| rs9576654 | 0.89[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9576655 | 0.89[AFR][1000 genomes];0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754118 | chr13:39347702-40222644 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv1053818 | chr13:39512274-39533011 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
