Variant report

Variant	rs9589955
Chromosome Location	chr13:94979736-94979737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11840269	1.00[EUR][1000 genomes]
rs11840781	1.00[EUR][1000 genomes]
rs11843735	1.00[EUR][1000 genomes]
rs16949687	1.00[EUR][1000 genomes]
rs28429747	1.00[EUR][1000 genomes]
rs56730982	1.00[EUR][1000 genomes]
rs59941228	1.00[EUR][1000 genomes]
rs731752	1.00[EUR][1000 genomes]
rs7319816	1.00[EUR][1000 genomes]
rs7326476	1.00[EUR][1000 genomes]
rs7992666	1.00[EUR][1000 genomes]
rs7996693	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94958800-94981600	Weak transcription	Spleen	Spleen
2	chr13:94969800-94981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:94973000-94982200	Weak transcription	Pancreas	Pancrea
4	chr13:94974600-94982000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr13:94975000-94980600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr13:94975000-94980800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:94975000-94980800	Enhancers	Thymus	Thymus
8	chr13:94975000-94981800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr13:94975600-94981000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr13:94976000-94983200	Enhancers	HSMMtube	muscle
11	chr13:94976200-94983200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr13:94976600-94981200	Enhancers	Fetal Thymus	thymus
13	chr13:94976600-94984000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr13:94977000-94981600	Enhancers	Ovary	ovary
15	chr13:94977400-94980200	Enhancers	NH-A	brain
16	chr13:94977400-94980800	Enhancers	Fetal Kidney	kidney
17	chr13:94978200-94981000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr13:94978200-94981000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr13:94978200-94981400	Weak transcription	NHDF-Ad	bronchial
20	chr13:94978200-94982600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr13:94978400-94980400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr13:94978400-94980800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr13:94978400-94980800	Weak transcription	NHLF	lung
24	chr13:94978400-94981000	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr13:94978400-94981400	Weak transcription	Adipose Nuclei	Adipose
26	chr13:94978600-94980800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr13:94978600-94981400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr13:94978800-94980800	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr13:94978800-94981200	Weak transcription	Osteobl	bone
30	chr13:94979200-94980000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
31	chr13:94979200-94980400	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr13:94979200-94980400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr13:94979200-94980800	Flanking Active TSS	GM12878-XiMat	blood
34	chr13:94979200-94982000	Enhancers	Fetal Lung	lung
35	chr13:94979200-94989600	Enhancers	Fetal Muscle Leg	muscle
36	chr13:94979400-94979800	Enhancers	H1 Cell Line	embryonic stem cell
37	chr13:94979400-94979800	Enhancers	H9 Cell Line	embryonic stem cell
38	chr13:94979400-94979800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr13:94979400-94979800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr13:94979400-94979800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
41	chr13:94979400-94979800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr13:94979400-94979800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
43	chr13:94979400-94980000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr13:94979400-94980000	Enhancers	Muscle Satellite Cultured Cells	--
45	chr13:94979400-94980000	Enhancers	Placenta Amnion	Placenta Amnion
46	chr13:94979400-94980200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr13:94979400-94980200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr13:94979400-94980200	Flanking Active TSS	Primary B cells from cord blood	blood
49	chr13:94979400-94980200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
50	chr13:94979400-94980200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood

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