Variant report

Variant	rs11840269
Chromosome Location	chr13:94851164-94851165
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:94849752..94851268-chr13:94853277..94854922,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10162061	1.00[EUR][1000 genomes]
rs11840781	1.00[EUR][1000 genomes]
rs11843735	1.00[EUR][1000 genomes]
rs16949687	1.00[EUR][1000 genomes]
rs28429747	1.00[EUR][1000 genomes]
rs59941228	1.00[EUR][1000 genomes]
rs731752	1.00[EUR][1000 genomes]
rs7319816	1.00[EUR][1000 genomes]
rs7323891	1.00[EUR][1000 genomes]
rs7326476	1.00[EUR][1000 genomes]
rs7992328	1.00[EUR][1000 genomes]
rs7996693	1.00[EUR][1000 genomes]
rs9301938	1.00[EUR][1000 genomes]
rs9584186	1.00[EUR][1000 genomes]
rs9584188	1.00[EUR][1000 genomes]
rs9584189	1.00[EUR][1000 genomes]
rs9589885	1.00[EUR][1000 genomes]
rs9589903	1.00[EUR][1000 genomes]
rs9589904	1.00[EUR][1000 genomes]
rs9589905	1.00[EUR][1000 genomes]
rs9589906	1.00[EUR][1000 genomes]
rs9589908	1.00[EUR][1000 genomes]
rs9589955	1.00[EUR][1000 genomes]
rs9743359	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv430599	chr13:94699399-94934930	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv933263	chr13:94711183-94897124	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1051276	chr13:94745995-94872494	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv526048	chr13:94767311-94880219	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv562754	chr13:94770794-94895346	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94834200-94867000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:94847200-94852200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:94849200-94852000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr13:94849200-94857400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:94850600-94851800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr13:94850800-94851200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr13:94850800-94851400	Enhancers	HSMMtube	muscle
8	chr13:94850800-94851600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr13:94850800-94851800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:94850800-94851800	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr13:94850800-94852000	Enhancers	HSMM	muscle
12	chr13:94851000-94851800	Enhancers	NH-A	brain
13	chr13:94851000-94851800	Enhancers	Osteobl	bone
14	chr13:94851000-94857800	Weak transcription	Primary hematopoietic stem cells	blood

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