Variant report

Variant	rs731752
Chromosome Location	chr13:94913564-94913565
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10162061	1.00[EUR][1000 genomes]
rs11840269	1.00[EUR][1000 genomes]
rs11840781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11843735	1.00[EUR][1000 genomes]
rs16949687	1.00[EUR][1000 genomes]
rs28429747	1.00[EUR][1000 genomes]
rs56730982	1.00[EUR][1000 genomes]
rs59941228	1.00[EUR][1000 genomes]
rs7319816	1.00[EUR][1000 genomes]
rs7323891	1.00[EUR][1000 genomes]
rs7326476	1.00[EUR][1000 genomes]
rs7992328	1.00[EUR][1000 genomes]
rs7992666	1.00[EUR][1000 genomes]
rs7996693	1.00[EUR][1000 genomes]
rs9301938	1.00[EUR][1000 genomes]
rs9584186	1.00[EUR][1000 genomes]
rs9584188	1.00[EUR][1000 genomes]
rs9584189	1.00[EUR][1000 genomes]
rs9589903	1.00[EUR][1000 genomes]
rs9589904	1.00[EUR][1000 genomes]
rs9589905	1.00[EUR][1000 genomes]
rs9589906	1.00[EUR][1000 genomes]
rs9589908	1.00[EUR][1000 genomes]
rs9589955	1.00[EUR][1000 genomes]
rs9743359	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv430599	chr13:94699399-94934930	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94906400-94920800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:94910400-94913800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr13:94912600-94914600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr13:94912600-94914600	Enhancers	Fetal Thymus	thymus
5	chr13:94913000-94916200	Weak transcription	Thymus	Thymus
6	chr13:94913400-94913800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:94913400-94914000	Enhancers	Primary B cells from peripheral blood	blood
8	chr13:94913400-94914000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr13:94913400-94914000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links