Variant report

Variant	rs9589904
Chromosome Location	chr13:94753198-94753199
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DCT-13	chr13:94752706-94753670	NONHSAT034719
2	lnc-GPR180-8	chr13:94751210-94761265	predAs_engstrom06_BU158437_1

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10162061	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11840269	1.00[EUR][1000 genomes]
rs11840781	1.00[EUR][1000 genomes]
rs11843735	1.00[EUR][1000 genomes]
rs16949458	1.00[YRI][hapmap]
rs28429747	1.00[EUR][1000 genomes]
rs59941228	1.00[EUR][1000 genomes]
rs731752	1.00[EUR][1000 genomes]
rs7323891	1.00[EUR][1000 genomes]
rs7986713	0.83[AMR][1000 genomes]
rs7992328	1.00[EUR][1000 genomes]
rs7994749	1.00[AMR][1000 genomes]
rs7996693	1.00[EUR][1000 genomes]
rs9301924	0.83[AMR][1000 genomes]
rs9301933	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs9301938	1.00[EUR][1000 genomes]
rs9584179	0.83[AMR][1000 genomes]
rs9584180	0.83[AMR][1000 genomes]
rs9584186	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584188	1.00[EUR][1000 genomes]
rs9584189	1.00[EUR][1000 genomes]
rs9589879	0.83[AMR][1000 genomes]
rs9589885	1.00[EUR][1000 genomes]
rs9589886	0.83[AMR][1000 genomes]
rs9589887	0.83[AMR][1000 genomes]
rs9589888	0.83[AMR][1000 genomes]
rs9589890	0.83[AMR][1000 genomes]
rs9589891	1.00[AMR][1000 genomes]
rs9589892	1.00[AMR][1000 genomes]
rs9589893	1.00[AMR][1000 genomes]
rs9589903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9589905	1.00[EUR][1000 genomes]
rs9589906	1.00[EUR][1000 genomes]
rs9589908	1.00[EUR][1000 genomes]
rs9743359	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs983083	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv430599	chr13:94699399-94934930	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv933263	chr13:94711183-94897124	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv900924	chr13:94714981-94819307	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1051276	chr13:94745995-94872494	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94752600-94753600	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links