Variant report

Variant	rs9610355
Chromosome Location	chr22:22163633-22163634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:22139546..22142407-chr22:22162132..22163873,3	K562	blood:
2	chr22:22162194..22165063-chr22:22219763..22221740,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100030	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs11089745	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11703249	1.00[CEU][hapmap]
rs11703350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11703624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11703767	0.83[EUR][1000 genomes]
rs11704265	0.83[EUR][1000 genomes]
rs11704433	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11704597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12172215	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12172360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13054366	1.00[CEU][hapmap]
rs13058633	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13515	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17820162	0.87[AMR][1000 genomes]
rs2040167	1.00[AFR][1000 genomes]
rs2040168	1.00[AFR][1000 genomes]
rs2070507	1.00[CEU][hapmap]
rs2073415	1.00[CEU][hapmap]
rs2083564	1.00[CEU][hapmap]
rs2266968	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2266974	1.00[CEU][hapmap]
rs2276005	1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2276006	1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2283795	1.00[CEU][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2283796	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2298434	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3827303	1.00[CEU][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4820146	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4821263	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4821336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4821367	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4821369	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4821371	1.00[CEU][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4821401	1.00[CEU][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5749769	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs5749779	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5749792	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5749811	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5749939	1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5749984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5750275	1.00[CEU][hapmap]
rs5750301	1.00[CEU][hapmap]
rs5754916	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs5754927	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5754932	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs5754944	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5754947	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5754968	1.00[CEU][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs5754970	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs5755008	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5755040	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5755074	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5755579	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs5755745	1.00[CEU][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs5755978	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs5755996	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs5756076	1.00[CEU][hapmap]
rs5756253	1.00[CEU][hapmap]
rs5756326	1.00[CEU][hapmap]
rs61757967	1.00[AFR][1000 genomes]
rs71314794	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9607209	1.00[AFR][1000 genomes]
rs9607210	1.00[AFR][1000 genomes]
rs9607274	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9607286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9607348	0.83[EUR][1000 genomes]
rs9607363	0.83[EUR][1000 genomes]
rs9607370	0.83[EUR][1000 genomes]
rs9607385	1.00[CEU][hapmap]
rs9610174	1.00[AFR][1000 genomes]
rs9610181	1.00[AFR][1000 genomes]
rs9610199	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9610219	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9610228	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9610518	0.83[EUR][1000 genomes]
rs9610536	0.83[EUR][1000 genomes]
rs9610574	1.00[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948603	chr22:21928916-22601814	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	422 gene(s)	inside rSNPs	diseases
2	nsv948902	chr22:21928916-22657900	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	426 gene(s)	inside rSNPs	diseases
3	nsv1063962	chr22:21939722-22934593	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	477 gene(s)	inside rSNPs	diseases
4	nsv1058617	chr22:21939922-22934454	Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	477 gene(s)	inside rSNPs	diseases
5	nsv529694	chr22:21957411-22905068	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	474 gene(s)	inside rSNPs	diseases
6	nsv531797	chr22:21977700-22959729	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	476 gene(s)	inside rSNPs	diseases
7	nsv1066403	chr22:22010822-22352262	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
8	nsv1066964	chr22:22055123-22228745	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv544604	chr22:22055123-22228745	Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv588322	chr22:22086373-22186479	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
11	nsv948580	chr22:22100718-22839559	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
12	esv1795495	chr22:22131125-22204916	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv914470	chr22:22131125-22272737	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
14	nsv1059265	chr22:22131125-22457154	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
15	esv3379268	chr22:22135347-22446281	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
16	esv3385441	chr22:22135777-22320294	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
17	esv2752404	chr22:22141825-22570417	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
18	esv2422277	chr22:22144108-22442159	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
19	esv2422295	chr22:22144108-22442159	Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
20	esv2422374	chr22:22152248-22595246	Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
21	esv2422403	chr22:22152248-23112582	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
22	nsv1062641	chr22:22157661-22367697	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
23	esv2422390	chr22:22157964-23112582	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:22113400-22163800	Weak transcription	Right Atrium	heart
2	chr22:22114200-22172800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr22:22121600-22171400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr22:22127200-22167600	Weak transcription	Psoas Muscle	Psoas
5	chr22:22127200-22170600	Weak transcription	Hela-S3	cervix
6	chr22:22139200-22172800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr22:22142800-22170600	Weak transcription	Colonic Mucosa	Colon
8	chr22:22145800-22170600	Weak transcription	Small Intestine	intestine
9	chr22:22160000-22164800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr22:22160000-22167600	Weak transcription	Pancreas	Pancrea
11	chr22:22160000-22171600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr22:22160200-22164800	Weak transcription	Fetal Intestine Small	intestine
13	chr22:22160400-22171200	Weak transcription	Right Ventricle	heart
14	chr22:22160600-22171800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr22:22160600-22172800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr22:22160800-22171400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr22:22160800-22171400	Weak transcription	Gastric	stomach
18	chr22:22160800-22172400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr22:22161000-22169800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr22:22161000-22170400	Weak transcription	HMEC	breast
21	chr22:22161000-22171400	Weak transcription	Esophagus	oesophagus
22	chr22:22161200-22166200	Weak transcription	Fetal Brain Female	brain
23	chr22:22161200-22167800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr22:22161400-22169800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr22:22161400-22173200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr22:22161600-22164200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr22:22161600-22164600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr22:22161600-22164600	Weak transcription	Fetal Stomach	stomach
29	chr22:22161600-22168000	Weak transcription	Lung	lung
30	chr22:22161600-22170000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr22:22161600-22170400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr22:22161600-22170400	Weak transcription	NHEK	skin
33	chr22:22161600-22182000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr22:22161800-22164200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr22:22161800-22166400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr22:22161800-22169000	Weak transcription	Left Ventricle	heart
37	chr22:22161800-22169000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr22:22161800-22169800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr22:22161800-22170400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr22:22161800-22170400	Weak transcription	HSMMtube	muscle
41	chr22:22161800-22170600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr22:22162000-22165200	Weak transcription	NH-A	brain
43	chr22:22162000-22166200	Weak transcription	Brain Germinal Matrix	brain
44	chr22:22162000-22167200	Weak transcription	Fetal Intestine Large	intestine
45	chr22:22162000-22167400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr22:22162000-22167800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr22:22162000-22168200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr22:22162000-22169400	Weak transcription	Spleen	Spleen
49	chr22:22162000-22169600	Weak transcription	HUVEC	blood vessel
50	chr22:22162000-22169800	Weak transcription	Duodenum Mucosa	Duodenum

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