Variant report

Variant	rs961156
Chromosome Location	chr3:159443787-159443788
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr3:159443627-159444381	MCF10A-Er-Src	breast:	n/a	chr3:159444074-159444081
2	E2F4	chr3:159443701-159444120	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000243116	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11705997	0.91[EUR][1000 genomes]
rs11719460	0.92[EUR][1000 genomes]
rs12497646	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13059769	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497763	0.93[EUR][1000 genomes]
rs16830643	0.88[EUR][1000 genomes]
rs2366268	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6790484	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9845025	0.87[EUR][1000 genomes]
rs9845408	0.87[EUR][1000 genomes]
rs9865997	0.91[EUR][1000 genomes]
rs9869674	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9872731	0.87[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159438200-159445400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:159441400-159446400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:159441400-159446600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:159442000-159444600	Enhancers	NHDF-Ad	bronchial
5	chr3:159442000-159445000	Enhancers	HSMM	muscle
6	chr3:159442000-159446200	Enhancers	NHEK	skin
7	chr3:159442000-159446600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:159442200-159445800	Enhancers	Osteobl	bone
9	chr3:159442400-159444000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:159442400-159446400	Enhancers	HMEC	breast
11	chr3:159442600-159444800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:159442800-159444400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:159443000-159444000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:159443000-159444000	Weak transcription	A549	lung
15	chr3:159443000-159444000	Weak transcription	HSMMtube	muscle
16	chr3:159443000-159444000	Weak transcription	NH-A	brain
17	chr3:159443000-159449400	Weak transcription	NHLF	lung
18	chr3:159443600-159444000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:159443600-159444800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:159443600-159445000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr3:159443600-159449200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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