Variant report

Variant	rs11719460
Chromosome Location	chr3:159446656-159446657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11705997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12497646	0.90[EUR][1000 genomes]
rs13059769	1.00[CEU][hapmap];0.84[GIH][hapmap];0.96[TSI][hapmap];0.92[EUR][1000 genomes]
rs13064601	0.89[CEU][hapmap];0.85[CHB][hapmap];0.81[EUR][1000 genomes]
rs1497763	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16830643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2118322	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap]
rs2366268	0.87[EUR][1000 genomes]
rs4680511	0.89[CEU][hapmap]
rs6441268	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap]
rs6790484	1.00[CEU][hapmap];0.84[GIH][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes]
rs7628548	1.00[CEU][hapmap]
rs7628992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs961156	0.92[EUR][1000 genomes]
rs9812406	1.00[CEU][hapmap];0.84[GIH][hapmap];0.96[TSI][hapmap]
rs9838950	1.00[CEU][hapmap]
rs9845025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9845408	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9865997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9869514	0.89[CEU][hapmap]
rs9869674	1.00[CEU][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9872731	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159443000-159449400	Weak transcription	NHLF	lung
2	chr3:159443600-159449200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:159444200-159449200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:159444400-159449200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:159444600-159449200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:159444600-159449200	Weak transcription	NHDF-Ad	bronchial
7	chr3:159444600-159449400	Weak transcription	HSMMtube	muscle
8	chr3:159444600-159450000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:159444600-159450000	Weak transcription	Hela-S3	cervix
10	chr3:159444600-159450200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:159444800-159448800	Weak transcription	A549	lung
12	chr3:159444800-159449600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:159444800-159449800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:159444800-159449800	Weak transcription	NH-A	brain
15	chr3:159445000-159449600	Weak transcription	HSMM	muscle
16	chr3:159445600-159449400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:159445800-159446800	Enhancers	HUVEC	blood vessel
18	chr3:159445800-159449600	Weak transcription	Osteobl	bone
19	chr3:159446200-159448600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:159446200-159448800	Weak transcription	NHEK	skin
21	chr3:159446400-159448600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:159446400-159448800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr3:159446400-159448800	Weak transcription	HMEC	breast
24	chr3:159446600-159448000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr3:159446600-159449000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:159446600-159449200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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