Variant report

Variant	rs9625
Chromosome Location	chr11:120355791-120355792
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120355108..120357565-chr11:120365015..120366916,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10502236	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10892573	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892579	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10892580	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892581	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217837	0.85[EUR][1000 genomes]
rs11217847	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217853	0.90[EUR][1000 genomes]
rs11217859	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217860	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217861	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11217865	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217868	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217869	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217871	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217872	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11217873	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217879	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217881	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217883	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217886	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11217889	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217890	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600200	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600558	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600723	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602796	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606928	1.00[ASN][1000 genomes]
rs11607944	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361340	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361642	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362794	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12363974	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363975	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2120430	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35912781	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4373935	1.00[CEU][hapmap]
rs4537767	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56329702	0.83[EUR][1000 genomes]
rs57912596	0.95[EUR][1000 genomes]
rs61898768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900794	0.91[EUR][1000 genomes]
rs61900795	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67551874	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67617613	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7108596	0.95[EUR][1000 genomes]
rs7110955	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7120040	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7120174	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73582205	1.00[ASN][1000 genomes]
rs73584117	1.00[ASN][1000 genomes]
rs73584140	1.00[ASN][1000 genomes]
rs747419	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs766894	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943147	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7948299	0.98[EUR][1000 genomes]
rs9666435	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9666441	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120304800-120359400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:120308000-120359000	Strong transcription	Placenta	Placenta
3	chr11:120308400-120357800	Strong transcription	Adipose Nuclei	Adipose
4	chr11:120310400-120358000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:120311200-120357200	Strong transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:120312800-120357800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:120314200-120362200	Strong transcription	Liver	Liver
8	chr11:120316400-120382000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:120320000-120358000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:120320200-120357600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:120321000-120358000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:120329000-120358800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:120335200-120359600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:120336200-120358600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr11:120337600-120357200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:120339800-120362200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:120342200-120358400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:120342800-120358800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:120343600-120357200	Strong transcription	Stomach Smooth Muscle	stomach
20	chr11:120343800-120358000	Strong transcription	Osteobl	bone
21	chr11:120344000-120359200	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr11:120344200-120358600	Strong transcription	Brain Inferior Temporal Lobe	brain
23	chr11:120345200-120358400	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:120345400-120356600	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:120345600-120357400	Strong transcription	Fetal Muscle Leg	muscle
26	chr11:120346400-120359800	Weak transcription	Primary B cells from cord blood	blood
27	chr11:120346800-120357400	Strong transcription	Fetal Stomach	stomach
28	chr11:120348800-120357200	Strong transcription	Brain Germinal Matrix	brain
29	chr11:120350400-120356400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:120350400-120358800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr11:120352200-120356400	Weak transcription	Right Atrium	heart
32	chr11:120352400-120358600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:120352600-120357400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr11:120353000-120359800	Weak transcription	Small Intestine	intestine
35	chr11:120353800-120360200	Weak transcription	HMEC	breast
36	chr11:120354000-120357000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:120354200-120357200	Strong transcription	Fetal Intestine Small	intestine
38	chr11:120354400-120358800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:120354600-120357200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:120354600-120357200	Strong transcription	Fetal Brain Female	brain
41	chr11:120354600-120357200	Strong transcription	Lung	lung
42	chr11:120354600-120357400	Strong transcription	Skeletal Muscle Male	skeletal muscle
43	chr11:120354600-120358600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr11:120354600-120358600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:120354600-120358600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:120354800-120356000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
47	chr11:120354800-120356200	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:120354800-120356400	Strong transcription	A549	lung
49	chr11:120354800-120356600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:120354800-120356600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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