Variant report

Variant	rs11606928
Chromosome Location	chr11:120171361-120171362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:119992154..119994463-chr11:120170248..120173038,2	MCF-7	breast:
2	chr11:120101055..120116563-chr11:120160593..120179156,52	K562	blood:
3	chr11:120104352..120110604-chr11:120164438..120175098,43	MCF-7	breast:
4	chr11:120149912..120152911-chr11:120168871..120171487,3	K562	blood:
5	chr11:120104850..120106373-chr11:120170312..120171433,18	MCF-7	breast:
6	chr11:120104420..120112680-chr11:120168705..120181524,41	K562	blood:
7	chr11:120104320..120113596-chr11:120167938..120177639,38	MCF-7	breast:
8	chr11:120105076..120106736-chr11:120169805..120171450,18	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137699	Chromatin interaction
ENSG00000137709	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1073635	1.00[ASN][1000 genomes]
rs10892537	1.00[ASN][1000 genomes]
rs10892573	1.00[ASN][1000 genomes]
rs10892580	1.00[ASN][1000 genomes]
rs10892581	1.00[ASN][1000 genomes]
rs11217847	1.00[ASN][1000 genomes]
rs11217859	1.00[ASN][1000 genomes]
rs11217860	1.00[ASN][1000 genomes]
rs11217865	1.00[ASN][1000 genomes]
rs11217868	1.00[ASN][1000 genomes]
rs11217869	1.00[ASN][1000 genomes]
rs11217871	1.00[ASN][1000 genomes]
rs11217873	1.00[ASN][1000 genomes]
rs11217879	1.00[ASN][1000 genomes]
rs11217881	1.00[ASN][1000 genomes]
rs11217883	1.00[ASN][1000 genomes]
rs11217889	1.00[ASN][1000 genomes]
rs11217890	1.00[ASN][1000 genomes]
rs11600200	1.00[ASN][1000 genomes]
rs11600558	1.00[ASN][1000 genomes]
rs11600723	1.00[ASN][1000 genomes]
rs11602796	1.00[ASN][1000 genomes]
rs11607944	1.00[ASN][1000 genomes]
rs11820277	1.00[ASN][1000 genomes]
rs12361340	1.00[ASN][1000 genomes]
rs12361642	1.00[ASN][1000 genomes]
rs12363974	1.00[ASN][1000 genomes]
rs12363975	1.00[ASN][1000 genomes]
rs2120430	1.00[ASN][1000 genomes]
rs35912781	1.00[ASN][1000 genomes]
rs4537767	1.00[ASN][1000 genomes]
rs61072783	1.00[ASN][1000 genomes]
rs61898267	1.00[ASN][1000 genomes]
rs61898282	1.00[ASN][1000 genomes]
rs61898283	1.00[ASN][1000 genomes]
rs61898284	1.00[ASN][1000 genomes]
rs61898287	1.00[ASN][1000 genomes]
rs61898768	1.00[ASN][1000 genomes]
rs61900795	1.00[ASN][1000 genomes]
rs67551874	1.00[ASN][1000 genomes]
rs73582205	1.00[ASN][1000 genomes]
rs73584117	1.00[ASN][1000 genomes]
rs73584140	1.00[ASN][1000 genomes]
rs73584846	1.00[ASN][1000 genomes]
rs73584849	1.00[ASN][1000 genomes]
rs73584865	1.00[ASN][1000 genomes]
rs766894	1.00[ASN][1000 genomes]
rs9625	1.00[ASN][1000 genomes]
rs9666441	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120169600-120178200	Enhancers	Placenta	Placenta
2	chr11:120170200-120171400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:120170200-120171600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:120170600-120171400	Enhancers	Aorta	Aorta
5	chr11:120170800-120172000	Weak transcription	Stomach Mucosa	stomach
6	chr11:120170800-120172200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:120170800-120172200	Weak transcription	Esophagus	oesophagus
8	chr11:120170800-120172200	Weak transcription	Gastric	stomach
9	chr11:120170800-120172200	Weak transcription	Lung	lung
10	chr11:120170800-120172200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:120170800-120172200	Weak transcription	GM12878-XiMat	blood
12	chr11:120170800-120172400	Weak transcription	Fetal Intestine Large	intestine
13	chr11:120170800-120172400	Weak transcription	Fetal Intestine Small	intestine
14	chr11:120170800-120172600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:120170800-120172600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:120170800-120172600	Weak transcription	Pancreas	Pancrea
17	chr11:120170800-120173200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr11:120170800-120173600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:120170800-120174600	Weak transcription	HMEC	breast
20	chr11:120170800-120174800	Weak transcription	Hela-S3	cervix
21	chr11:120170800-120175200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr11:120170800-120175200	Weak transcription	Small Intestine	intestine
23	chr11:120170800-120175800	Weak transcription	A549	lung
24	chr11:120170800-120176200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:120170800-120176200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:120171000-120172200	Weak transcription	Colonic Mucosa	Colon
27	chr11:120171000-120174000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:120171200-120172200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr11:120171200-120172400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:120171200-120172400	Weak transcription	Liver	Liver
31	chr11:120171200-120172600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr11:120171200-120173000	Weak transcription	NHEK	skin
33	chr11:120171200-120175400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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