Variant report

Variant	rs61898287
Chromosome Location	chr11:120092774-120092775
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:120091006..120093784-chr11:120097633..120101741,5	K562	blood:
2	chr11:120041303..120043768-chr11:120091508..120094206,2	MCF-7	breast:
3	chr11:120081505..120083755-chr11:120092635..120094681,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184232	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1073635	1.00[ASN][1000 genomes]
rs10892537	1.00[ASN][1000 genomes]
rs10892573	1.00[ASN][1000 genomes]
rs11217847	1.00[ASN][1000 genomes]
rs11217859	1.00[ASN][1000 genomes]
rs11217860	1.00[ASN][1000 genomes]
rs11217865	1.00[ASN][1000 genomes]
rs11217868	1.00[ASN][1000 genomes]
rs11600558	1.00[ASN][1000 genomes]
rs11600723	1.00[ASN][1000 genomes]
rs11602796	1.00[ASN][1000 genomes]
rs11606928	1.00[ASN][1000 genomes]
rs11607944	1.00[ASN][1000 genomes]
rs11820277	1.00[ASN][1000 genomes]
rs12361340	1.00[ASN][1000 genomes]
rs12361642	1.00[ASN][1000 genomes]
rs12363974	1.00[ASN][1000 genomes]
rs12363975	1.00[ASN][1000 genomes]
rs2120430	1.00[ASN][1000 genomes]
rs41460849	0.97[EUR][1000 genomes]
rs4537767	1.00[ASN][1000 genomes]
rs61072783	1.00[ASN][1000 genomes]
rs61898267	1.00[ASN][1000 genomes]
rs61898270	0.89[EUR][1000 genomes]
rs61898278	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61898279	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61898281	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61898282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898284	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898286	0.97[EUR][1000 genomes]
rs61898288	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61898294	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61898297	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61900795	1.00[ASN][1000 genomes]
rs67551874	1.00[ASN][1000 genomes]
rs73582205	1.00[ASN][1000 genomes]
rs73584846	1.00[ASN][1000 genomes]
rs73584849	1.00[ASN][1000 genomes]
rs73584865	1.00[ASN][1000 genomes]
rs9666441	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv518464	chr11:120040442-120109967	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120082800-120095000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr11:120083800-120094000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:120084200-120093000	Genic enhancers	Fetal Muscle Leg	muscle
4	chr11:120084200-120102600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:120084400-120093000	Genic enhancers	Fetal Intestine Large	intestine
6	chr11:120084600-120093200	Genic enhancers	Fetal Intestine Small	intestine
7	chr11:120084600-120095400	Weak transcription	Fetal Kidney	kidney
8	chr11:120085000-120092800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr11:120085000-120093200	Genic enhancers	Fetal Muscle Trunk	muscle
10	chr11:120086000-120092800	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr11:120086400-120097000	Weak transcription	NHEK	skin
12	chr11:120086600-120095800	Weak transcription	NH-A	brain
13	chr11:120087200-120093200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:120087600-120094000	Enhancers	Stomach Mucosa	stomach
15	chr11:120088400-120092800	Enhancers	Brain Anterior Caudate	brain
16	chr11:120088400-120092800	Enhancers	Brain Cingulate Gyrus	brain
17	chr11:120088400-120092800	Enhancers	Brain Substantia Nigra	brain
18	chr11:120088400-120092800	Enhancers	Colon Smooth Muscle	Colon
19	chr11:120088400-120092800	Enhancers	Gastric	stomach
20	chr11:120088400-120092800	Enhancers	Right Atrium	heart
21	chr11:120088400-120093000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:120088400-120093000	Enhancers	Esophagus	oesophagus
23	chr11:120088400-120094400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr11:120089400-120092800	Enhancers	Brain Hippocampus Middle	brain
25	chr11:120089800-120095600	Weak transcription	Lung	lung
26	chr11:120089800-120099600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:120090200-120095800	Weak transcription	Fetal Heart	heart
28	chr11:120090400-120092800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
29	chr11:120090400-120093800	Weak transcription	Psoas Muscle	Psoas
30	chr11:120090400-120095400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:120090600-120092800	Genic enhancers	Rectal Mucosa Donor 31	rectum
32	chr11:120090600-120093600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:120090800-120095400	Weak transcription	Fetal Lung	lung
34	chr11:120090800-120095600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr11:120090800-120099600	Weak transcription	NHDF-Ad	bronchial
36	chr11:120091000-120094600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:120091000-120095600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:120091000-120096600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:120091000-120097400	Weak transcription	NHLF	lung
40	chr11:120091000-120097600	Genic enhancers	Liver	Liver
41	chr11:120091000-120102800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:120091200-120092800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:120091200-120095400	Weak transcription	HSMM	muscle
44	chr11:120091200-120096800	Enhancers	Adipose Nuclei	Adipose
45	chr11:120091200-120097000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:120091400-120092800	Enhancers	Pancreas	Pancrea
47	chr11:120091400-120095000	Strong transcription	Fetal Stomach	stomach
48	chr11:120091400-120095400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:120091600-120092800	Enhancers	Brain Angular Gyrus	brain
50	chr11:120091600-120092800	Enhancers	Duodenum Mucosa	Duodenum

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