Variant report

Variant	rs61898279
Chromosome Location	chr11:120086365-120086366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:120085723..120087273-chr11:120102230..120104353,2	K562	blood:
2	chr11:120080610..120089931-chr11:120105398..120112199,18	K562	blood:
3	chr11:120080291..120083263-chr11:120085229..120087871,5	MCF-7	breast:
4	chr11:120038992..120040633-chr11:120083752..120086483,2	K562	blood:
5	chr11:120054397..120057443-chr11:120084852..120087919,3	K562	blood:
6	chr11:120085109..120087647-chr11:120129498..120132466,2	K562	blood:

Variant related genes	Relation type
ENSG00000184232	Chromatin interaction
ENSG00000137699	Chromatin interaction
ENSG00000176984	Chromatin interaction
ENSG00000137709	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs41460849	0.88[EUR][1000 genomes]
rs61898270	0.92[EUR][1000 genomes]
rs61898278	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61898281	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61898282	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61898283	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61898284	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61898286	0.88[EUR][1000 genomes]
rs61898287	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61898288	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61898294	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61898297	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv518464	chr11:120040442-120109967	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120082800-120086400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr11:120082800-120087200	Weak transcription	Lung	lung
3	chr11:120082800-120091800	Enhancers	Placenta	Placenta
4	chr11:120082800-120095000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:120083000-120086400	Weak transcription	HMEC	breast
6	chr11:120083400-120088400	Weak transcription	Brain Angular Gyrus	brain
7	chr11:120083600-120089000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:120083600-120089600	Weak transcription	Fetal Heart	heart
9	chr11:120083800-120088400	Weak transcription	Brain Substantia Nigra	brain
10	chr11:120083800-120094000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:120084000-120086800	Weak transcription	Left Ventricle	heart
12	chr11:120084000-120088400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:120084000-120089000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:120084000-120092200	Weak transcription	Fetal Thymus	thymus
15	chr11:120084200-120086800	Genic enhancers	Spleen	Spleen
16	chr11:120084200-120087800	Genic enhancers	Sigmoid Colon	Sigmoid Colon
17	chr11:120084200-120088200	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:120084200-120088400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:120084200-120093000	Genic enhancers	Fetal Muscle Leg	muscle
20	chr11:120084200-120102600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:120084400-120086800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:120084400-120088400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:120084400-120088400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:120084400-120088400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:120084400-120088400	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:120084400-120088400	Weak transcription	Right Atrium	heart
27	chr11:120084400-120093000	Genic enhancers	Fetal Intestine Large	intestine
28	chr11:120084600-120087000	Genic enhancers	HepG2	liver
29	chr11:120084600-120089000	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr11:120084600-120091400	Genic enhancers	Fetal Stomach	stomach
31	chr11:120084600-120091600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:120084600-120093200	Genic enhancers	Fetal Intestine Small	intestine
33	chr11:120084600-120095400	Weak transcription	Fetal Kidney	kidney
34	chr11:120084800-120086400	Strong transcription	NHEK	skin
35	chr11:120084800-120086600	Weak transcription	Colonic Mucosa	Colon
36	chr11:120084800-120086600	Genic enhancers	Rectal Mucosa Donor 29	rectum
37	chr11:120084800-120088400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:120084800-120088400	Weak transcription	Small Intestine	intestine
39	chr11:120084800-120092000	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr11:120085000-120086400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:120085000-120087200	Genic enhancers	Pancreas	Pancrea
42	chr11:120085000-120087800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:120085000-120088600	Genic enhancers	Rectal Mucosa Donor 31	rectum
44	chr11:120085000-120092800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr11:120085000-120093200	Genic enhancers	Fetal Muscle Trunk	muscle
46	chr11:120085200-120086800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr11:120085200-120087600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:120085200-120092400	Enhancers	Ovary	ovary
49	chr11:120085600-120086800	Weak transcription	Right Ventricle	heart
50	chr11:120085600-120087400	Enhancers	Gastric	stomach

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