Variant report

Variant	rs61898270
Chromosome Location	chr11:120075768-120075769
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs41460849	0.86[EUR][1000 genomes]
rs61898278	0.92[EUR][1000 genomes]
rs61898279	0.92[EUR][1000 genomes]
rs61898281	0.86[EUR][1000 genomes]
rs61898282	0.89[EUR][1000 genomes]
rs61898283	0.89[EUR][1000 genomes]
rs61898284	0.89[EUR][1000 genomes]
rs61898286	0.86[EUR][1000 genomes]
rs61898287	0.89[EUR][1000 genomes]
rs61898288	0.89[EUR][1000 genomes]
rs61898294	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv518464	chr11:120040442-120109967	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	esv3510698	chr11:120072292-120075890	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3510697	chr11:120072742-120075790	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3510700	chr11:120072742-120075790	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120068800-120078400	Weak transcription	Small Intestine	intestine
2	chr11:120069800-120076000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:120069800-120078400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:120070200-120077200	Weak transcription	Spleen	Spleen
5	chr11:120070800-120075800	Weak transcription	Liver	Liver
6	chr11:120071400-120078400	Weak transcription	Brain Anterior Caudate	brain
7	chr11:120074200-120076000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:120074400-120075800	Enhancers	Placenta	Placenta
9	chr11:120074400-120076800	Enhancers	NHDF-Ad	bronchial
10	chr11:120074400-120077200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:120074600-120079400	Weak transcription	Fetal Intestine Large	intestine
12	chr11:120074800-120078400	Weak transcription	Fetal Intestine Small	intestine
13	chr11:120074800-120078600	Weak transcription	Fetal Muscle Leg	muscle
14	chr11:120075200-120076200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:120075200-120076200	Enhancers	Esophagus	oesophagus
16	chr11:120075200-120076400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr11:120075200-120076800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:120075200-120076800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:120075200-120077000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:120075200-120077200	Enhancers	HMEC	breast
21	chr11:120075200-120081000	Enhancers	Pancreas	Pancrea
22	chr11:120075400-120077000	Weak transcription	Fetal Stomach	stomach
23	chr11:120075600-120076800	Enhancers	NHEK	skin
24	chr11:120075600-120078000	Weak transcription	Fetal Kidney	kidney
25	chr11:120075600-120078200	Weak transcription	Fetal Lung	lung
26	chr11:120075600-120078400	Enhancers	HepG2	liver

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