Variant report

Variant	rs61898281
Chromosome Location	chr11:120088926-120088927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:120080610..120089931-chr11:120105398..120112199,18	K562	blood:
2	chr11:120087659..120092163-chr11:120106045..120111255,7	K562	blood:
3	chr11:120088424..120091961-chr11:120094010..120097522,6	K562	blood:
4	chr11:120082173..120084864-chr11:120088352..120091615,4	MCF-7	breast:
5	chr11:120040035..120042877-chr11:120088247..120091000,2	K562	blood:

Variant related genes	Relation type
ENSG00000137709	Chromatin interaction
ENSG00000184232	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs41460849	0.88[EUR][1000 genomes]
rs61898270	0.86[EUR][1000 genomes]
rs61898278	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61898279	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61898282	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61898283	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61898284	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61898286	0.88[EUR][1000 genomes]
rs61898287	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61898288	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61898294	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61898297	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv518464	chr11:120040442-120109967	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120082800-120091800	Enhancers	Placenta	Placenta
2	chr11:120082800-120095000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:120083600-120089000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:120083600-120089600	Weak transcription	Fetal Heart	heart
5	chr11:120083800-120094000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr11:120084000-120089000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:120084000-120092200	Weak transcription	Fetal Thymus	thymus
8	chr11:120084200-120093000	Genic enhancers	Fetal Muscle Leg	muscle
9	chr11:120084200-120102600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:120084400-120093000	Genic enhancers	Fetal Intestine Large	intestine
11	chr11:120084600-120089000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr11:120084600-120091400	Genic enhancers	Fetal Stomach	stomach
13	chr11:120084600-120091600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:120084600-120093200	Genic enhancers	Fetal Intestine Small	intestine
15	chr11:120084600-120095400	Weak transcription	Fetal Kidney	kidney
16	chr11:120084800-120092000	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr11:120085000-120092800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr11:120085000-120093200	Genic enhancers	Fetal Muscle Trunk	muscle
19	chr11:120085200-120092400	Enhancers	Ovary	ovary
20	chr11:120085800-120091000	Enhancers	Liver	Liver
21	chr11:120086000-120092800	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr11:120086200-120090600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:120086200-120090800	Enhancers	Fetal Lung	lung
24	chr11:120086400-120090000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:120086400-120091600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
26	chr11:120086400-120092600	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr11:120086400-120097000	Weak transcription	NHEK	skin
28	chr11:120086600-120095800	Weak transcription	NH-A	brain
29	chr11:120086800-120090200	Weak transcription	HSMM	muscle
30	chr11:120086800-120090600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:120087000-120090200	Weak transcription	NHDF-Ad	bronchial
32	chr11:120087200-120089000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
33	chr11:120087200-120089800	Enhancers	Lung	lung
34	chr11:120087200-120093200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:120087400-120089200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:120087600-120090200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:120087600-120094000	Enhancers	Stomach Mucosa	stomach
38	chr11:120087800-120089000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:120087800-120089800	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr11:120087800-120090000	Weak transcription	K562	blood
41	chr11:120088000-120090000	Weak transcription	Left Ventricle	heart
42	chr11:120088000-120092000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:120088200-120092600	Enhancers	Right Ventricle	heart
44	chr11:120088400-120089200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
45	chr11:120088400-120089200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:120088400-120089400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:120088400-120089400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:120088400-120089400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr11:120088400-120089400	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr11:120088400-120090400	Flanking Active TSS	Stomach Smooth Muscle	stomach

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