Variant report

Variant	rs41460849
Chromosome Location	chr11:120104859-120104860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:120104754-120104933	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120079370..120085014-chr11:120104504..120109067,9	K562	blood:
2	chr11:120101055..120116563-chr11:120160593..120179156,52	K562	blood:
3	chr11:120104352..120110604-chr11:120164438..120175098,43	MCF-7	breast:
4	chr11:120104850..120106373-chr11:120170312..120171433,18	MCF-7	breast:
5	chr11:120104320..120113596-chr11:120167938..120177639,38	MCF-7	breast:
6	chr11:120104420..120112680-chr11:120168705..120181524,41	K562	blood:

No data

No data

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs61898270	0.86[EUR][1000 genomes]
rs61898278	0.88[EUR][1000 genomes]
rs61898279	0.88[EUR][1000 genomes]
rs61898281	0.88[EUR][1000 genomes]
rs61898282	0.97[EUR][1000 genomes]
rs61898283	0.97[EUR][1000 genomes]
rs61898284	0.97[EUR][1000 genomes]
rs61898286	0.94[EUR][1000 genomes]
rs61898287	0.97[EUR][1000 genomes]
rs61898288	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61898294	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61898297	0.92[AMR][1000 genomes]
rs731512	0.87[TSI][hapmap]
rs947906	0.83[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv518464	chr11:120040442-120109967	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120096600-120110800	Weak transcription	Right Atrium	heart
2	chr11:120097200-120106200	Weak transcription	Esophagus	oesophagus
3	chr11:120098600-120105400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:120099800-120110800	Weak transcription	Ovary	ovary
5	chr11:120100400-120106200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:120100600-120105800	Strong transcription	Fetal Intestine Small	intestine
7	chr11:120101200-120105000	Weak transcription	Fetal Kidney	kidney
8	chr11:120101200-120105400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:120101600-120111000	Weak transcription	Liver	Liver
10	chr11:120102000-120108200	Weak transcription	Fetal Intestine Large	intestine
11	chr11:120103000-120105800	Weak transcription	HMEC	breast
12	chr11:120103800-120105800	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr11:120104600-120105800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:120104600-120105800	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
15	chr11:120104800-120105000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
16	chr11:120104800-120105200	Weak transcription	Pancreas	Pancrea
17	chr11:120104800-120105800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr11:120104800-120106000	Enhancers	Spleen	Spleen
19	chr11:120104800-120106800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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