Variant report

Variant	rs11820277
Chromosome Location	chr11:120109513-120109514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr11:120109509-120109678	K562	blood:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:120101055..120116563-chr11:120160593..120179156,52	K562	blood:
2	chr11:120107374..120110396-chr11:120138871..120141159,3	K562	blood:
3	chr11:120080610..120089931-chr11:120105398..120112199,18	K562	blood:
4	chr11:120042899..120045222-chr11:120108366..120110220,2	MCF-7	breast:
5	chr11:120036264..120041871-chr11:120106231..120109757,9	K562	blood:
6	chr11:120104352..120110604-chr11:120164438..120175098,43	MCF-7	breast:
7	chr11:120107661..120110242-chr11:120155519..120159071,3	K562	blood:
8	chr11:120104320..120113596-chr11:120167938..120177639,38	MCF-7	breast:
9	chr11:120107465..120110396-chr11:120139257..120141159,2	K562	blood:
10	chr11:120104420..120112680-chr11:120168705..120181524,41	K562	blood:
11	chr11:120107869..120109638-chr11:120477863..120480013,2	K562	blood:

No data

Variant related genes	Relation type
POU2F3	TF binding region
ENSG00000137709	Chromatin interaction
ENSG00000184232	Chromatin interaction
ENSG00000176984	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1073635	1.00[ASN][1000 genomes]
rs10892537	1.00[ASN][1000 genomes]
rs10892573	1.00[ASN][1000 genomes]
rs10892580	1.00[ASN][1000 genomes]
rs10892581	1.00[ASN][1000 genomes]
rs11217847	1.00[ASN][1000 genomes]
rs11217859	1.00[ASN][1000 genomes]
rs11217860	1.00[ASN][1000 genomes]
rs11217865	1.00[ASN][1000 genomes]
rs11217868	1.00[ASN][1000 genomes]
rs11217869	1.00[ASN][1000 genomes]
rs11217871	1.00[ASN][1000 genomes]
rs11217873	1.00[ASN][1000 genomes]
rs11600200	1.00[ASN][1000 genomes]
rs11600558	1.00[ASN][1000 genomes]
rs11600723	1.00[ASN][1000 genomes]
rs11602796	1.00[ASN][1000 genomes]
rs11606928	1.00[ASN][1000 genomes]
rs11607944	1.00[ASN][1000 genomes]
rs12361340	1.00[ASN][1000 genomes]
rs12361642	1.00[ASN][1000 genomes]
rs12363974	1.00[ASN][1000 genomes]
rs12363975	1.00[ASN][1000 genomes]
rs2120430	1.00[ASN][1000 genomes]
rs4537767	1.00[ASN][1000 genomes]
rs61072783	1.00[ASN][1000 genomes]
rs61898267	1.00[ASN][1000 genomes]
rs61898282	1.00[ASN][1000 genomes]
rs61898283	1.00[ASN][1000 genomes]
rs61898284	1.00[ASN][1000 genomes]
rs61898287	1.00[ASN][1000 genomes]
rs61900795	1.00[ASN][1000 genomes]
rs67551874	1.00[ASN][1000 genomes]
rs73582205	1.00[ASN][1000 genomes]
rs73584117	1.00[ASN][1000 genomes]
rs73584846	1.00[ASN][1000 genomes]
rs73584849	1.00[ASN][1000 genomes]
rs73584865	1.00[ASN][1000 genomes]
rs766894	1.00[ASN][1000 genomes]
rs7934134	0.87[AFR][1000 genomes]
rs9666441	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv518464	chr11:120040442-120109967	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120096600-120110800	Weak transcription	Right Atrium	heart
2	chr11:120099800-120110800	Weak transcription	Ovary	ovary
3	chr11:120101600-120111000	Weak transcription	Liver	Liver
4	chr11:120105800-120110000	Weak transcription	Fetal Intestine Small	intestine
5	chr11:120106000-120110200	Weak transcription	Spleen	Spleen
6	chr11:120106200-120110400	Weak transcription	Pancreas	Pancrea
7	chr11:120106800-120110400	Weak transcription	Esophagus	oesophagus
8	chr11:120108000-120110000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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