Variant report

Variant	rs67551874
Chromosome Location	chr11:120235574-120235575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:120234002..120236611-chr11:120244878..120247433,2	MCF-7	breast:
2	chr11:120226152..120228748-chr11:120235115..120237770,2	K562	blood:
3	chr11:120234940..120237431-chr11:120239798..120241396,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10502236	0.90[EUR][1000 genomes]
rs10892573	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892579	0.85[EUR][1000 genomes]
rs10892580	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892581	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217837	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11217847	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217853	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11217859	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217860	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217861	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11217865	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217868	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217869	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217871	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217872	0.87[EUR][1000 genomes]
rs11217873	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217879	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217881	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217883	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217889	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217890	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600200	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600558	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600723	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602796	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606928	1.00[ASN][1000 genomes]
rs11607944	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820277	1.00[ASN][1000 genomes]
rs12361340	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361642	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362794	0.82[EUR][1000 genomes]
rs12363974	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363975	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2120430	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35912781	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4537767	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56329702	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57912596	0.90[EUR][1000 genomes]
rs61072783	1.00[ASN][1000 genomes]
rs61898267	1.00[ASN][1000 genomes]
rs61898282	1.00[ASN][1000 genomes]
rs61898283	1.00[ASN][1000 genomes]
rs61898284	1.00[ASN][1000 genomes]
rs61898287	1.00[ASN][1000 genomes]
rs61898768	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900794	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61900795	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67617613	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7108596	0.90[EUR][1000 genomes]
rs7110955	0.87[EUR][1000 genomes]
rs7120040	0.81[EUR][1000 genomes]
rs7120174	0.83[EUR][1000 genomes]
rs73582205	1.00[ASN][1000 genomes]
rs73584117	1.00[ASN][1000 genomes]
rs73584140	1.00[ASN][1000 genomes]
rs73584846	1.00[ASN][1000 genomes]
rs73584849	1.00[ASN][1000 genomes]
rs73584865	1.00[ASN][1000 genomes]
rs747419	0.88[EUR][1000 genomes]
rs766894	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943147	0.88[EUR][1000 genomes]
rs7948299	0.87[EUR][1000 genomes]
rs9625	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9666435	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9666441	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv529003	chr11:120209386-120355230	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1050935	chr11:120224544-120276373	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1036694	chr11:120230243-120285603	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1037573	chr11:120230243-120286918	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120216000-120239000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:120216400-120244800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:120217600-120257000	Weak transcription	HSMM	muscle
4	chr11:120224800-120248800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:120224800-120260800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:120225000-120248200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:120225200-120242200	Weak transcription	A549	lung
8	chr11:120225200-120251000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:120225800-120242200	Weak transcription	Fetal Intestine Small	intestine
10	chr11:120226400-120242400	Weak transcription	Fetal Intestine Large	intestine
11	chr11:120226400-120246800	Weak transcription	Small Intestine	intestine
12	chr11:120229800-120236600	Weak transcription	GM12878-XiMat	blood
13	chr11:120232000-120274800	Weak transcription	Ovary	ovary
14	chr11:120232200-120238400	Weak transcription	Right Ventricle	heart
15	chr11:120232200-120238800	Weak transcription	Right Atrium	heart
16	chr11:120233000-120245800	Weak transcription	NHDF-Ad	bronchial
17	chr11:120233400-120242600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr11:120233600-120236000	Weak transcription	K562	blood
19	chr11:120234000-120242200	Weak transcription	NHLF	lung
20	chr11:120234400-120235800	Enhancers	Psoas Muscle	Psoas
21	chr11:120234600-120250200	Weak transcription	Osteobl	bone
22	chr11:120234800-120236800	Weak transcription	Left Ventricle	heart
23	chr11:120234800-120236800	Weak transcription	Pancreas	Pancrea
24	chr11:120234800-120241000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:120234800-120241800	Weak transcription	Gastric	stomach
26	chr11:120234800-120242400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:120235000-120238400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:120235000-120247800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:120235200-120240600	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links