Variant report

Variant	rs9649961
Chromosome Location	chr8:130577382-130577383
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10505545	0.88[MEX][hapmap]
rs4733711	0.91[GIH][hapmap]
rs6470740	0.85[CEU][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.91[ASN][1000 genomes]
rs6987588	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7817503	0.87[MEX][hapmap]
rs7843207	0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9649961	EFR3A	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130568800-130587000	Weak transcription	Thymus	Thymus
2	chr8:130575400-130578000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:130575600-130577800	Enhancers	Dnd41	blood
4	chr8:130576400-130577600	Transcr. at gene 5' and 3'	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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