Variant report

Variant	rs7817503
Chromosome Location	chr8:130575441-130575442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10505545	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395903	0.82[ASN][1000 genomes]
rs6470740	0.84[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs6987588	0.81[CEU][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7840212	0.87[JPT][hapmap]
rs7843207	0.88[EUR][1000 genomes]
rs9297794	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9649961	0.87[MEX][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7817503	EFR3A	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130568800-130587000	Weak transcription	Thymus	Thymus
2	chr8:130571200-130575600	Genic enhancers	Dnd41	blood
3	chr8:130574600-130576200	Strong transcription	K562	blood
4	chr8:130575400-130578000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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