Variant report

Variant	rs7840212
Chromosome Location	chr8:130599247-130599248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:129281503..129282352-chr8:130598838..130599562,2	MCF-7	breast:
2	chr8:130594211..130595830-chr8:130597987..130599684,2	K562	blood:
3	chr8:130315430..130315945-chr8:130599039..130599935,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10505545	0.87[JPT][hapmap]
rs1368700	0.80[CEU][hapmap];0.83[MEX][hapmap]
rs1433577	0.80[CEU][hapmap]
rs1433580	0.80[CEU][hapmap]
rs7000289	0.80[CEU][hapmap]
rs7005227	0.80[CEU][hapmap]
rs7008811	0.80[CEU][hapmap];0.83[MEX][hapmap]
rs7817503	0.87[JPT][hapmap]
rs996313	0.80[CEU][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7840212	EFR3A	cis	cerebellum	SCAN
rs7840212	ST3GAL1	cis	parietal	SCAN
rs7840212	PHF20L1	cis	cerebellum	SCAN
rs7840212	PRKCH	trans	lymphoblastoid	seeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130592400-130601200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr8:130592600-130603600	Enhancers	Dnd41	blood
3	chr8:130592600-130607000	Enhancers	Primary hematopoietic stem cells	blood
4	chr8:130595200-130602200	Weak transcription	Thymus	Thymus
5	chr8:130595200-130605800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr8:130595600-130603400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr8:130596000-130603600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr8:130596800-130599800	Enhancers	K562	blood
9	chr8:130597200-130599600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:130597400-130599400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:130597400-130600000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr8:130598600-130599400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:130598600-130599800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr8:130598800-130599400	Enhancers	Fetal Muscle Leg	muscle
15	chr8:130598800-130600000	Enhancers	Fetal Thymus	thymus
16	chr8:130599000-130599400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:130599000-130599400	Enhancers	H9 Cell Line	embryonic stem cell
18	chr8:130599000-130599400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr8:130599000-130599400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:130599000-130599600	Enhancers	H1 Cell Line	embryonic stem cell
21	chr8:130599200-130599400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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