Variant report

Variant	rs9677959
Chromosome Location	chr2:72634646-72634647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10173152	0.84[EUR][1000 genomes]
rs10175824	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10176044	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10207869	0.84[EUR][1000 genomes]
rs10496183	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11674508	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11680197	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11684981	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11884225	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11884869	0.91[EUR][1000 genomes]
rs11887356	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11890482	0.91[EUR][1000 genomes]
rs11891573	0.91[EUR][1000 genomes]
rs11894521	0.91[EUR][1000 genomes]
rs11897200	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11902051	0.84[EUR][1000 genomes]
rs11903453	0.89[EUR][1000 genomes]
rs11903908	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11903912	0.91[EUR][1000 genomes]
rs1517179	0.88[EUR][1000 genomes]
rs17008057	0.91[EUR][1000 genomes]
rs17008082	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17008143	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17040320	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1914339	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4507127	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4508623	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55714718	0.91[EUR][1000 genomes]
rs55727931	0.97[EUR][1000 genomes]
rs55728837	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55840408	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55939880	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56109129	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56173504	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56184446	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56718524	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57286048	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57730885	0.91[EUR][1000 genomes]
rs58033567	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58035683	0.84[EUR][1000 genomes]
rs58582296	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59881252	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59974816	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60536402	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60806585	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6546761	0.91[EUR][1000 genomes]
rs6546763	0.91[EUR][1000 genomes]
rs6546769	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6546770	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6546771	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66539158	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66560019	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66827358	0.91[EUR][1000 genomes]
rs66920016	0.88[EUR][1000 genomes]
rs6707920	0.88[EUR][1000 genomes]
rs67085067	0.89[EUR][1000 genomes]
rs6711442	0.88[EUR][1000 genomes]
rs6712930	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6712989	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67166018	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6717250	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6718052	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6723136	0.91[EUR][1000 genomes]
rs6723380	0.91[EUR][1000 genomes]
rs6727580	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6731631	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6731988	0.91[EUR][1000 genomes]
rs6733532	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6733538	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6735400	0.88[EUR][1000 genomes]
rs6738521	0.91[EUR][1000 genomes]
rs6743881	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6746583	0.88[EUR][1000 genomes]
rs6746586	0.88[EUR][1000 genomes]
rs6755440	0.88[EUR][1000 genomes]
rs6758689	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs719119	0.81[EUR][1000 genomes]
rs719120	0.84[EUR][1000 genomes]
rs72841795	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7420583	0.94[EUR][1000 genomes]
rs7424190	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7559116	0.88[EUR][1000 genomes]
rs7569059	0.91[EUR][1000 genomes]
rs7571483	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7575050	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7583268	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7591608	0.88[EUR][1000 genomes]
rs7596126	0.97[EUR][1000 genomes]
rs7599755	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7600134	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7603342	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7603535	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7604296	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7607353	0.88[EUR][1000 genomes]
rs7608054	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9309465	0.91[EUR][1000 genomes]
rs9677947	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9678682	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv999179	chr2:72561463-72761103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1008335	chr2:72561463-72819704	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv2773	chr2:72603908-72649311	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72613800-72654000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:72619600-72640600	Weak transcription	Ovary	ovary
3	chr2:72628400-72648800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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