The 2.0 version of rSNPBase

Variant report

Variant rs56184446
Chromosome Location chr2:72598522-72598523
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:72559200-72607400 Weak transcription Liver Liver
2 chr2:72572200-72601400 Weak transcription Adipose Nuclei Adipose
3 chr2:72572200-72607200 Weak transcription Psoas Muscle Psoas
4 chr2:72576600-72605200 Weak transcription Primary T killer naive cells fromperipheralblood blood
5 chr2:72578000-72606400 Weak transcription HSMM muscle
6 chr2:72579200-72601800 Weak transcription Spleen Spleen
7 chr2:72579400-72600400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
8 chr2:72580200-72605200 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr2:72581600-72607800 Weak transcription Brain Inferior Temporal Lobe brain
10 chr2:72582600-72605400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
11 chr2:72585000-72599600 Weak transcription Ovary ovary
12 chr2:72590200-72604200 Weak transcription Brain Hippocampus Middle brain
13 chr2:72592600-72613400 Weak transcription Gastric stomach
14 chr2:72594200-72608400 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr2:72594400-72607200 Weak transcription Brain Substantia Nigra brain
16 chr2:72595000-72605200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr2:72595000-72613400 Weak transcription Aorta Aorta
18 chr2:72595000-72613600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr2:72595200-72604200 Weak transcription Placenta Placenta
20 chr2:72595200-72605400 Weak transcription HUES64 Cell Line embryonic stem cell
21 chr2:72595200-72606800 Weak transcription Lung lung
22 chr2:72595200-72608600 Weak transcription NHEK skin
23 chr2:72595200-72613400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr2:72595200-72613400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr2:72595200-72613400 Weak transcription Fetal Stomach stomach
26 chr2:72595200-72613400 Weak transcription Pancreas Pancrea
27 chr2:72595200-72613400 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr2:72595200-72613600 Weak transcription Right Ventricle heart
29 chr2:72595400-72613200 Weak transcription Left Ventricle heart
30 chr2:72595400-72613400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr2:72597200-72607000 Weak transcription Fetal Brain Male brain
32 chr2:72597400-72605200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
33 chr2:72597800-72606800 Weak transcription Esophagus oesophagus
34 chr2:72598000-72605200 Weak transcription Primary T helper naive cells fromperipheralblood blood
35 chr2:72598200-72598800 ZNF genes & repeats Fetal Lung lung
36 chr2:72598200-72604200 Weak transcription Fetal Intestine Small intestine
37 chr2:72598400-72599000 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr2:72598400-72599400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015