Variant report

Variant	rs1387
Chromosome Location	chr2:72394028-72394029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10173152	1.00[ASN][1000 genomes]
rs10193621	1.00[ASN][1000 genomes]
rs10197528	1.00[ASN][1000 genomes]
rs10203221	1.00[ASN][1000 genomes]
rs10207869	1.00[ASN][1000 genomes]
rs10496183	1.00[ASN][1000 genomes]
rs1079144	1.00[ASN][1000 genomes]
rs11674508	1.00[ASN][1000 genomes]
rs11680197	1.00[ASN][1000 genomes]
rs11681845	1.00[ASN][1000 genomes]
rs11682749	1.00[ASN][1000 genomes]
rs11684981	1.00[ASN][1000 genomes]
rs11685903	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11884225	1.00[ASN][1000 genomes]
rs11884869	1.00[ASN][1000 genomes]
rs11890482	1.00[ASN][1000 genomes]
rs11891573	1.00[ASN][1000 genomes]
rs11894521	1.00[ASN][1000 genomes]
rs11897200	1.00[ASN][1000 genomes]
rs11899270	1.00[ASN][1000 genomes]
rs11899672	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11902051	1.00[ASN][1000 genomes]
rs11903453	1.00[ASN][1000 genomes]
rs11903908	1.00[ASN][1000 genomes]
rs11903912	1.00[ASN][1000 genomes]
rs13411648	1.00[ASN][1000 genomes]
rs1517179	1.00[ASN][1000 genomes]
rs17007922	1.00[CEU][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17007926	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17007939	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17007984	1.00[ASN][1000 genomes]
rs17008057	1.00[ASN][1000 genomes]
rs17008082	1.00[ASN][1000 genomes]
rs17008143	1.00[ASN][1000 genomes]
rs17040320	1.00[ASN][1000 genomes]
rs1914339	1.00[ASN][1000 genomes]
rs28503372	1.00[ASN][1000 genomes]
rs34172703	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35064163	1.00[ASN][1000 genomes]
rs55700162	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55714718	1.00[ASN][1000 genomes]
rs55840408	1.00[ASN][1000 genomes]
rs55939880	1.00[ASN][1000 genomes]
rs56109129	1.00[ASN][1000 genomes]
rs56173504	1.00[ASN][1000 genomes]
rs56178437	1.00[ASN][1000 genomes]
rs56184446	1.00[ASN][1000 genomes]
rs56718524	1.00[ASN][1000 genomes]
rs57286048	1.00[ASN][1000 genomes]
rs57730885	1.00[ASN][1000 genomes]
rs58033567	1.00[ASN][1000 genomes]
rs58035683	1.00[ASN][1000 genomes]
rs58582296	1.00[ASN][1000 genomes]
rs59974816	1.00[ASN][1000 genomes]
rs60536402	1.00[ASN][1000 genomes]
rs60806585	1.00[ASN][1000 genomes]
rs60872571	1.00[ASN][1000 genomes]
rs60977474	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61037557	1.00[ASN][1000 genomes]
rs61448485	1.00[ASN][1000 genomes]
rs6546751	1.00[ASN][1000 genomes]
rs6546754	1.00[ASN][1000 genomes]
rs6546761	1.00[ASN][1000 genomes]
rs6546763	1.00[ASN][1000 genomes]
rs6546769	1.00[ASN][1000 genomes]
rs66539158	1.00[ASN][1000 genomes]
rs66560019	1.00[ASN][1000 genomes]
rs66827358	1.00[ASN][1000 genomes]
rs66888584	1.00[ASN][1000 genomes]
rs66920016	1.00[ASN][1000 genomes]
rs67085067	1.00[ASN][1000 genomes]
rs6709233	1.00[ASN][1000 genomes]
rs6709493	1.00[ASN][1000 genomes]
rs6711442	1.00[ASN][1000 genomes]
rs6712930	1.00[ASN][1000 genomes]
rs6712989	1.00[ASN][1000 genomes]
rs67166018	1.00[ASN][1000 genomes]
rs6717250	1.00[ASN][1000 genomes]
rs6717899	1.00[ASN][1000 genomes]
rs6718052	1.00[ASN][1000 genomes]
rs6723136	1.00[ASN][1000 genomes]
rs6723380	1.00[ASN][1000 genomes]
rs67235968	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6724795	1.00[ASN][1000 genomes]
rs6727580	1.00[ASN][1000 genomes]
rs6731631	1.00[ASN][1000 genomes]
rs6731988	1.00[ASN][1000 genomes]
rs6735400	1.00[ASN][1000 genomes]
rs6738521	1.00[ASN][1000 genomes]
rs6740982	1.00[ASN][1000 genomes]
rs6746583	1.00[ASN][1000 genomes]
rs6746586	1.00[ASN][1000 genomes]
rs6755440	1.00[ASN][1000 genomes]
rs6758689	1.00[ASN][1000 genomes]
rs68172337	1.00[ASN][1000 genomes]
rs719119	1.00[ASN][1000 genomes]
rs719120	1.00[ASN][1000 genomes]
rs72835256	1.00[ASN][1000 genomes]
rs72835276	1.00[ASN][1000 genomes]
rs72841783	1.00[ASN][1000 genomes]
rs72841795	1.00[ASN][1000 genomes]
rs72904482	1.00[ASN][1000 genomes]
rs72908315	1.00[ASN][1000 genomes]
rs72908317	1.00[ASN][1000 genomes]
rs7558666	1.00[ASN][1000 genomes]
rs7559116	1.00[ASN][1000 genomes]
rs7565358	1.00[ASN][1000 genomes]
rs7569059	1.00[ASN][1000 genomes]
rs7571483	1.00[ASN][1000 genomes]
rs7575050	1.00[ASN][1000 genomes]
rs7575090	1.00[ASN][1000 genomes]
rs7575536	1.00[ASN][1000 genomes]
rs7577354	1.00[ASN][1000 genomes]
rs7577860	1.00[ASN][1000 genomes]
rs7583268	1.00[ASN][1000 genomes]
rs7585598	1.00[ASN][1000 genomes]
rs7587370	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7591608	1.00[ASN][1000 genomes]
rs7592404	1.00[ASN][1000 genomes]
rs7604296	1.00[ASN][1000 genomes]
rs7608054	1.00[ASN][1000 genomes]
rs9309465	1.00[ASN][1000 genomes]
rs9677947	1.00[ASN][1000 genomes]
rs9678682	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72392400-72394200	Enhancers	Hela-S3	cervix
2	chr2:72393400-72402200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:72393400-72407600	Weak transcription	HMEC	breast
4	chr2:72393600-72394400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:72393600-72394400	Enhancers	A549	lung
6	chr2:72393600-72401200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:72393600-72414800	Weak transcription	NHEK	skin
8	chr2:72393800-72394200	Enhancers	Osteobl	bone
9	chr2:72393800-72394400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:72394000-72394800	Enhancers	Fetal Heart	heart

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