Variant report

Variant	rs6546751
Chromosome Location	chr2:72457612-72457613
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72446041..72448733-chr2:72456642..72458989,2	MCF-7	breast:

Extended variants
information (count: 162 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:161)

rs_ID	r²[population]
rs10173152	0.80[CEU][hapmap];1.00[ASN][1000 genomes]
rs10175824	1.00[ASN][1000 genomes]
rs10176044	1.00[ASN][1000 genomes]
rs10193621	1.00[ASN][1000 genomes]
rs10197528	1.00[ASN][1000 genomes]
rs10203221	1.00[ASN][1000 genomes]
rs10207869	0.80[CEU][hapmap];1.00[ASN][1000 genomes]
rs10496183	1.00[ASN][1000 genomes]
rs1079144	1.00[ASN][1000 genomes]
rs11126367	1.00[ASN][1000 genomes]
rs11674508	1.00[ASN][1000 genomes]
rs11680197	1.00[ASN][1000 genomes]
rs11681845	1.00[ASN][1000 genomes]
rs11682749	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11684981	1.00[ASN][1000 genomes]
rs11685876	1.00[ASN][1000 genomes]
rs11685903	1.00[ASN][1000 genomes]
rs11695000	1.00[ASN][1000 genomes]
rs11884162	1.00[ASN][1000 genomes]
rs11884225	1.00[ASN][1000 genomes]
rs11884869	1.00[ASN][1000 genomes]
rs11887356	1.00[ASN][1000 genomes]
rs11890482	1.00[ASN][1000 genomes]
rs11891573	1.00[ASN][1000 genomes]
rs11894521	1.00[ASN][1000 genomes]
rs11897200	1.00[ASN][1000 genomes]
rs11899270	1.00[ASN][1000 genomes]
rs11899672	1.00[ASN][1000 genomes]
rs11902051	1.00[ASN][1000 genomes]
rs11903453	1.00[ASN][1000 genomes]
rs11903908	1.00[ASN][1000 genomes]
rs11903912	1.00[ASN][1000 genomes]
rs13411648	1.00[ASN][1000 genomes]
rs1387	1.00[ASN][1000 genomes]
rs1517179	1.00[ASN][1000 genomes]
rs17007922	1.00[ASN][1000 genomes]
rs17007926	1.00[ASN][1000 genomes]
rs17007939	1.00[ASN][1000 genomes]
rs17007984	1.00[CEU][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008057	1.00[ASN][1000 genomes]
rs17008082	1.00[ASN][1000 genomes]
rs17008143	1.00[ASN][1000 genomes]
rs17008186	1.00[ASN][1000 genomes]
rs17008188	1.00[ASN][1000 genomes]
rs17040320	1.00[ASN][1000 genomes]
rs1914339	1.00[ASN][1000 genomes]
rs1949377	1.00[ASN][1000 genomes]
rs28503372	1.00[ASN][1000 genomes]
rs2901190	1.00[ASN][1000 genomes]
rs34172703	1.00[ASN][1000 genomes]
rs35064163	1.00[ASN][1000 genomes]
rs4507127	1.00[ASN][1000 genomes]
rs4508623	1.00[ASN][1000 genomes]
rs55700162	1.00[ASN][1000 genomes]
rs55714718	1.00[ASN][1000 genomes]
rs55727931	1.00[ASN][1000 genomes]
rs55728837	1.00[ASN][1000 genomes]
rs55825364	1.00[ASN][1000 genomes]
rs55840408	1.00[ASN][1000 genomes]
rs55939880	1.00[ASN][1000 genomes]
rs56109129	1.00[ASN][1000 genomes]
rs56173504	1.00[ASN][1000 genomes]
rs56178437	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56184446	1.00[ASN][1000 genomes]
rs56718524	1.00[ASN][1000 genomes]
rs56777837	1.00[ASN][1000 genomes]
rs57286048	1.00[ASN][1000 genomes]
rs57730885	1.00[ASN][1000 genomes]
rs58033567	1.00[ASN][1000 genomes]
rs58035683	1.00[ASN][1000 genomes]
rs58582296	1.00[ASN][1000 genomes]
rs59176504	1.00[ASN][1000 genomes]
rs59881252	1.00[ASN][1000 genomes]
rs59974816	1.00[ASN][1000 genomes]
rs60536402	1.00[ASN][1000 genomes]
rs60563535	1.00[ASN][1000 genomes]
rs60806585	1.00[ASN][1000 genomes]
rs60872571	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60977474	1.00[ASN][1000 genomes]
rs61037557	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61448485	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546754	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546761	1.00[ASN][1000 genomes]
rs6546763	1.00[ASN][1000 genomes]
rs6546769	1.00[ASN][1000 genomes]
rs66489235	1.00[ASN][1000 genomes]
rs66539158	1.00[ASN][1000 genomes]
rs66560019	1.00[ASN][1000 genomes]
rs66827358	1.00[ASN][1000 genomes]
rs66888584	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66920016	1.00[ASN][1000 genomes]
rs67085067	1.00[ASN][1000 genomes]
rs6709233	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6709493	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6711442	1.00[ASN][1000 genomes]
rs6712930	1.00[ASN][1000 genomes]
rs6712989	1.00[ASN][1000 genomes]
rs67166018	1.00[ASN][1000 genomes]
rs6717250	1.00[ASN][1000 genomes]
rs6717899	0.88[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6718052	1.00[ASN][1000 genomes]
rs6723136	1.00[ASN][1000 genomes]
rs6723380	1.00[ASN][1000 genomes]
rs67235968	1.00[ASN][1000 genomes]
rs6724795	1.00[CEU][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6727580	1.00[ASN][1000 genomes]
rs6729219	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6731631	1.00[ASN][1000 genomes]
rs6731988	1.00[ASN][1000 genomes]
rs6733532	1.00[ASN][1000 genomes]
rs6733538	1.00[ASN][1000 genomes]
rs6735400	1.00[ASN][1000 genomes]
rs6738521	1.00[ASN][1000 genomes]
rs6740982	1.00[CEU][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6743881	1.00[ASN][1000 genomes]
rs6746583	1.00[ASN][1000 genomes]
rs6746586	1.00[ASN][1000 genomes]
rs67491855	1.00[ASN][1000 genomes]
rs6755440	1.00[ASN][1000 genomes]
rs6758689	1.00[ASN][1000 genomes]
rs68172337	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs719119	1.00[ASN][1000 genomes]
rs719120	1.00[ASN][1000 genomes]
rs72835256	1.00[ASN][1000 genomes]
rs72835276	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72841783	1.00[ASN][1000 genomes]
rs72841795	1.00[ASN][1000 genomes]
rs72904482	1.00[ASN][1000 genomes]
rs72908315	1.00[ASN][1000 genomes]
rs72908317	1.00[ASN][1000 genomes]
rs7420583	1.00[ASN][1000 genomes]
rs7424190	1.00[ASN][1000 genomes]
rs7557942	1.00[ASN][1000 genomes]
rs7558666	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7559116	1.00[ASN][1000 genomes]
rs7561471	1.00[ASN][1000 genomes]
rs7565358	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7569059	1.00[ASN][1000 genomes]
rs7571483	1.00[ASN][1000 genomes]
rs7571517	1.00[ASN][1000 genomes]
rs7575050	1.00[ASN][1000 genomes]
rs7575090	1.00[ASN][1000 genomes]
rs7575536	1.00[ASN][1000 genomes]
rs7577244	1.00[ASN][1000 genomes]
rs7577354	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7577860	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7583268	1.00[ASN][1000 genomes]
rs7585598	1.00[ASN][1000 genomes]
rs7587370	1.00[ASN][1000 genomes]
rs7591608	1.00[ASN][1000 genomes]
rs7592404	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7596126	1.00[ASN][1000 genomes]
rs7599755	1.00[ASN][1000 genomes]
rs7600134	1.00[ASN][1000 genomes]
rs7603342	1.00[ASN][1000 genomes]
rs7603535	1.00[ASN][1000 genomes]
rs7604296	1.00[ASN][1000 genomes]
rs7608054	1.00[ASN][1000 genomes]
rs9309465	1.00[ASN][1000 genomes]
rs9677947	1.00[ASN][1000 genomes]
rs9678682	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72433000-72460600	Weak transcription	Pancreas	Pancrea
2	chr2:72433200-72466000	Weak transcription	Right Ventricle	heart
3	chr2:72433200-72468600	Weak transcription	Right Atrium	heart
4	chr2:72441000-72462800	Weak transcription	Left Ventricle	heart
5	chr2:72456400-72458400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr2:72456400-72458600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:72456600-72458000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:72457000-72458400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:72457000-72458400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr2:72457000-72458400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr2:72457000-72458800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr2:72457200-72458200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr2:72457600-72458000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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