The 2.0 version of rSNPBase

Variant report

Variant rs56718524
Chromosome Location chr2:72606346-72606347
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:72559200-72607400 Weak transcription Liver Liver
2 chr2:72572200-72607200 Weak transcription Psoas Muscle Psoas
3 chr2:72578000-72606400 Weak transcription HSMM muscle
4 chr2:72581600-72607800 Weak transcription Brain Inferior Temporal Lobe brain
5 chr2:72592600-72613400 Weak transcription Gastric stomach
6 chr2:72594200-72608400 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr2:72594400-72607200 Weak transcription Brain Substantia Nigra brain
8 chr2:72595000-72613400 Weak transcription Aorta Aorta
9 chr2:72595000-72613600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr2:72595200-72606800 Weak transcription Lung lung
11 chr2:72595200-72608600 Weak transcription NHEK skin
12 chr2:72595200-72613400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr2:72595200-72613400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr2:72595200-72613400 Weak transcription Fetal Stomach stomach
15 chr2:72595200-72613400 Weak transcription Pancreas Pancrea
16 chr2:72595200-72613400 Weak transcription Skeletal Muscle Female skeletal muscle
17 chr2:72595200-72613600 Weak transcription Right Ventricle heart
18 chr2:72595400-72613200 Weak transcription Left Ventricle heart
19 chr2:72595400-72613400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr2:72597200-72607000 Weak transcription Fetal Brain Male brain
21 chr2:72597800-72606800 Weak transcription Esophagus oesophagus
22 chr2:72599600-72613400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr2:72600000-72613400 Weak transcription Ovary ovary
24 chr2:72601200-72613400 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr2:72602000-72606600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr2:72602400-72608600 Weak transcription Rectal Mucosa Donor 31 rectum
27 chr2:72603200-72606800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
28 chr2:72603800-72613600 Weak transcription Duodenum Mucosa Duodenum
29 chr2:72604000-72606600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr2:72604000-72607800 Weak transcription Fetal Brain Female brain
31 chr2:72604000-72608400 Weak transcription Primary T helper naive cells from peripheral blood blood
32 chr2:72604000-72613400 Weak transcription HSMMtube muscle
33 chr2:72604200-72607000 Strong transcription Breast Myoepithelial Primary Cells Breast
34 chr2:72604200-72607000 Strong transcription Placenta Placenta
35 chr2:72604400-72607600 Weak transcription Primary T cells from cord blood blood
36 chr2:72604600-72608400 Weak transcription Fetal Muscle Leg muscle
37 chr2:72604600-72608600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
38 chr2:72604800-72607000 Strong transcription Brain Angular Gyrus brain
39 chr2:72604800-72607400 Weak transcription Brain Germinal Matrix brain
40 chr2:72605000-72607000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr2:72605000-72608600 Weak transcription Rectal Smooth Muscle rectum
42 chr2:72605200-72606400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
43 chr2:72605200-72606600 Strong transcription Stomach Smooth Muscle stomach
44 chr2:72605200-72606800 Strong transcription Duodenum Smooth Muscle Duodenum
45 chr2:72605200-72607200 Enhancers HUES48 Cell Line embryonic stem cell
46 chr2:72605200-72607400 Enhancers iPS-18 Cell Line embryonic stem cell
47 chr2:72605400-72606600 Weak transcription HUES6 Cell Line embryonic stem cell
48 chr2:72605400-72606800 Strong transcription Primary T helper cells fromperipheralblood blood
49 chr2:72605400-72607000 Enhancers ES-I3 Cell Line embryonic stem cell
50 chr2:72605400-72607000 Enhancers H1 Cell Line embryonic stem cell

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Last update: Aug 31, 2015