Variant report

Variant	rs6713712
Chromosome Location	chr2:72842713-72842714
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10175824	1.00[ASN][1000 genomes]
rs10176044	1.00[ASN][1000 genomes]
rs10496183	1.00[ASN][1000 genomes]
rs10496184	0.86[CEU][hapmap]
rs10496185	1.00[CEU][hapmap];0.85[YRI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10496187	0.96[YRI][hapmap]
rs11126367	1.00[ASN][1000 genomes]
rs11126369	0.86[CEU][hapmap];0.87[YRI][hapmap]
rs11126378	1.00[CEU][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11674508	1.00[ASN][1000 genomes]
rs11675268	0.86[CEU][hapmap]
rs11681845	1.00[ASN][1000 genomes]
rs11684981	1.00[ASN][1000 genomes]
rs11685876	0.86[CEU][hapmap];1.00[ASN][1000 genomes]
rs11689339	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11689707	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs11695000	0.86[CEU][hapmap];1.00[ASN][1000 genomes]
rs11884162	0.86[CEU][hapmap];1.00[ASN][1000 genomes]
rs11884266	0.93[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11887356	1.00[ASN][1000 genomes]
rs11892598	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11897200	1.00[ASN][1000 genomes]
rs12619565	0.90[YRI][hapmap]
rs1562361	0.85[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17008143	1.00[ASN][1000 genomes]
rs17008186	0.86[CEU][hapmap];1.00[ASN][1000 genomes]
rs17008188	1.00[ASN][1000 genomes]
rs17008208	0.85[CEU][hapmap]
rs17008241	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17008293	1.00[CEU][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008315	0.93[CEU][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008360	0.86[CEU][hapmap]
rs17008369	0.86[CEU][hapmap];0.96[YRI][hapmap]
rs17008371	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs17040320	1.00[ASN][1000 genomes]
rs17263172	0.86[CEU][hapmap]
rs1914339	1.00[ASN][1000 genomes]
rs1949377	0.86[CEU][hapmap];1.00[ASN][1000 genomes]
rs2068410	0.90[YRI][hapmap]
rs2901190	0.86[CEU][hapmap];1.00[ASN][1000 genomes]
rs4507127	1.00[ASN][1000 genomes]
rs4508623	1.00[ASN][1000 genomes]
rs4597553	0.90[YRI][hapmap]
rs55727931	1.00[ASN][1000 genomes]
rs55728837	1.00[ASN][1000 genomes]
rs55825364	1.00[ASN][1000 genomes]
rs55840408	1.00[ASN][1000 genomes]
rs55939880	1.00[ASN][1000 genomes]
rs56109129	1.00[ASN][1000 genomes]
rs56173504	1.00[ASN][1000 genomes]
rs56184446	1.00[ASN][1000 genomes]
rs56718524	1.00[ASN][1000 genomes]
rs56777837	1.00[ASN][1000 genomes]
rs57192957	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57286048	1.00[ASN][1000 genomes]
rs58033567	1.00[ASN][1000 genomes]
rs58967293	1.00[ASN][1000 genomes]
rs59176504	1.00[ASN][1000 genomes]
rs59881252	1.00[ASN][1000 genomes]
rs59974816	1.00[ASN][1000 genomes]
rs60314340	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60325013	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60536402	1.00[ASN][1000 genomes]
rs60563535	1.00[ASN][1000 genomes]
rs60580301	1.00[ASN][1000 genomes]
rs60806585	1.00[ASN][1000 genomes]
rs6546769	1.00[ASN][1000 genomes]
rs6546777	0.83[YRI][hapmap]
rs66469454	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66489235	1.00[ASN][1000 genomes]
rs66539158	1.00[ASN][1000 genomes]
rs66560019	1.00[ASN][1000 genomes]
rs66827358	1.00[ASN][1000 genomes]
rs67085067	1.00[ASN][1000 genomes]
rs6711701	0.85[EUR][1000 genomes]
rs6712930	1.00[ASN][1000 genomes]
rs6712989	1.00[ASN][1000 genomes]
rs6713143	0.85[CEU][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6716335	0.96[YRI][hapmap]
rs67166018	1.00[ASN][1000 genomes]
rs6717250	1.00[ASN][1000 genomes]
rs6718052	1.00[ASN][1000 genomes]
rs6720889	0.85[CEU][hapmap]
rs6731631	1.00[ASN][1000 genomes]
rs6733532	1.00[ASN][1000 genomes]
rs6733538	1.00[ASN][1000 genomes]
rs6736649	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6739768	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6740390	1.00[CEU][hapmap]
rs6743881	1.00[ASN][1000 genomes]
rs67491855	1.00[ASN][1000 genomes]
rs6749495	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67535553	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756070	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6758689	1.00[ASN][1000 genomes]
rs6761253	0.96[YRI][hapmap]
rs67869181	0.84[EUR][1000 genomes]
rs67970313	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72841795	1.00[ASN][1000 genomes]
rs72845175	1.00[ASN][1000 genomes]
rs7420583	1.00[ASN][1000 genomes]
rs7424190	1.00[ASN][1000 genomes]
rs7557942	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs7561471	1.00[ASN][1000 genomes]
rs7565198	0.80[YRI][hapmap]
rs7571517	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs7573417	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7575050	1.00[ASN][1000 genomes]
rs7577244	0.86[CEU][hapmap];1.00[ASN][1000 genomes]
rs7583268	1.00[ASN][1000 genomes]
rs7593084	0.96[YRI][hapmap]
rs7596126	1.00[ASN][1000 genomes]
rs7599755	1.00[ASN][1000 genomes]
rs7600134	1.00[ASN][1000 genomes]
rs7603342	1.00[ASN][1000 genomes]
rs7603535	1.00[ASN][1000 genomes]
rs7604083	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7604296	1.00[ASN][1000 genomes]
rs7604818	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs7607226	0.96[YRI][hapmap]
rs7608054	1.00[ASN][1000 genomes]
rs764766	1.00[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9677947	1.00[ASN][1000 genomes]
rs9678682	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv834257	chr2:72701083-72853548	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72834000-72843600	Weak transcription	Fetal Intestine Small	intestine
2	chr2:72836800-72843600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:72840000-72854400	Weak transcription	Ovary	ovary
4	chr2:72840200-72846000	Weak transcription	Fetal Lung	lung
5	chr2:72840200-72878600	Weak transcription	Aorta	Aorta
6	chr2:72842000-72847000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:72842200-72849800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:72842400-72843400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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