Variant report

Variant	rs17008315
Chromosome Location	chr2:72834955-72834956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72818726..72821056-chr2:72834950..72837136,2	MCF-7	breast:
2	chr2:72827697..72829477-chr2:72834836..72837419,2	K562	blood:

Extended variants
information (count: 133 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs10175824	1.00[ASN][1000 genomes]
rs10176044	1.00[ASN][1000 genomes]
rs10496183	1.00[ASN][1000 genomes]
rs10496185	0.92[CEU][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10496187	1.00[YRI][hapmap]
rs11126367	1.00[ASN][1000 genomes]
rs11126369	0.84[YRI][hapmap]
rs11126378	0.92[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11674508	1.00[ASN][1000 genomes]
rs11681845	1.00[ASN][1000 genomes]
rs11684981	1.00[ASN][1000 genomes]
rs11685876	1.00[ASN][1000 genomes]
rs11689339	0.92[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11689707	0.92[CEU][hapmap];0.86[YRI][hapmap];1.00[ASN][1000 genomes]
rs11695000	1.00[ASN][1000 genomes]
rs11884162	1.00[ASN][1000 genomes]
rs11884225	1.00[ASN][1000 genomes]
rs11884266	1.00[CEU][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11887356	1.00[ASN][1000 genomes]
rs11892598	0.92[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11897200	1.00[ASN][1000 genomes]
rs11903908	1.00[ASN][1000 genomes]
rs12619565	0.93[YRI][hapmap]
rs1517179	1.00[ASN][1000 genomes]
rs1562361	0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17008143	1.00[ASN][1000 genomes]
rs17008186	1.00[ASN][1000 genomes]
rs17008188	1.00[ASN][1000 genomes]
rs17008241	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs17008293	0.93[CEU][hapmap];0.86[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008369	1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs17008371	0.96[YRI][hapmap];0.82[AMR][1000 genomes]
rs17040320	1.00[ASN][1000 genomes]
rs1914339	1.00[ASN][1000 genomes]
rs1949377	1.00[ASN][1000 genomes]
rs2068410	0.93[YRI][hapmap]
rs2901190	1.00[ASN][1000 genomes]
rs4507127	1.00[ASN][1000 genomes]
rs4508623	1.00[ASN][1000 genomes]
rs4597553	0.93[YRI][hapmap]
rs55642420	0.82[AMR][1000 genomes]
rs55727931	1.00[ASN][1000 genomes]
rs55728837	1.00[ASN][1000 genomes]
rs55825364	1.00[ASN][1000 genomes]
rs55840408	1.00[ASN][1000 genomes]
rs55939880	1.00[ASN][1000 genomes]
rs56058174	0.82[AMR][1000 genomes]
rs56109129	1.00[ASN][1000 genomes]
rs56173504	1.00[ASN][1000 genomes]
rs56184446	1.00[ASN][1000 genomes]
rs56718524	1.00[ASN][1000 genomes]
rs56777837	1.00[ASN][1000 genomes]
rs57192957	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57286048	1.00[ASN][1000 genomes]
rs58033567	1.00[ASN][1000 genomes]
rs58967293	1.00[ASN][1000 genomes]
rs59176504	1.00[ASN][1000 genomes]
rs59216875	0.82[AMR][1000 genomes]
rs59881252	1.00[ASN][1000 genomes]
rs59974816	1.00[ASN][1000 genomes]
rs60314340	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60325013	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60536402	1.00[ASN][1000 genomes]
rs60563535	1.00[ASN][1000 genomes]
rs60580301	1.00[ASN][1000 genomes]
rs60806585	1.00[ASN][1000 genomes]
rs6546769	1.00[ASN][1000 genomes]
rs66469454	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66489235	1.00[ASN][1000 genomes]
rs66539158	1.00[ASN][1000 genomes]
rs66560019	1.00[ASN][1000 genomes]
rs66794803	0.82[AMR][1000 genomes]
rs66827358	1.00[ASN][1000 genomes]
rs66920016	1.00[ASN][1000 genomes]
rs67085067	1.00[ASN][1000 genomes]
rs6711442	1.00[ASN][1000 genomes]
rs6711701	0.85[EUR][1000 genomes]
rs6712930	1.00[ASN][1000 genomes]
rs6712989	1.00[ASN][1000 genomes]
rs6713143	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6713712	0.93[CEU][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6716335	1.00[YRI][hapmap]
rs67166018	1.00[ASN][1000 genomes]
rs6717250	1.00[ASN][1000 genomes]
rs6718052	1.00[ASN][1000 genomes]
rs6731631	1.00[ASN][1000 genomes]
rs6733532	1.00[ASN][1000 genomes]
rs6733538	1.00[ASN][1000 genomes]
rs6735400	1.00[ASN][1000 genomes]
rs6736649	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6739768	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs6740390	0.92[CEU][hapmap]
rs6743881	1.00[ASN][1000 genomes]
rs6746583	1.00[ASN][1000 genomes]
rs6746586	1.00[ASN][1000 genomes]
rs67491855	1.00[ASN][1000 genomes]
rs6749495	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67535553	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6755440	1.00[ASN][1000 genomes]
rs6756070	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs6758689	1.00[ASN][1000 genomes]
rs6761253	1.00[YRI][hapmap]
rs67869181	0.84[EUR][1000 genomes]
rs67970313	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72841795	1.00[ASN][1000 genomes]
rs72845175	1.00[ASN][1000 genomes]
rs7420583	1.00[ASN][1000 genomes]
rs7424190	1.00[ASN][1000 genomes]
rs7557942	1.00[ASN][1000 genomes]
rs7561471	1.00[ASN][1000 genomes]
rs7571517	1.00[ASN][1000 genomes]
rs7573417	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7575050	1.00[ASN][1000 genomes]
rs7577244	1.00[ASN][1000 genomes]
rs7583268	1.00[ASN][1000 genomes]
rs7593084	1.00[YRI][hapmap]
rs7596126	1.00[ASN][1000 genomes]
rs7599755	1.00[ASN][1000 genomes]
rs7600134	1.00[ASN][1000 genomes]
rs7603342	1.00[ASN][1000 genomes]
rs7603535	1.00[ASN][1000 genomes]
rs7604083	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs7604296	1.00[ASN][1000 genomes]
rs7604818	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs7607226	1.00[YRI][hapmap]
rs7608054	1.00[ASN][1000 genomes]
rs764766	0.92[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9677947	1.00[ASN][1000 genomes]
rs9678682	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv582208	chr2:72690622-72835886	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv834257	chr2:72701083-72853548	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72830800-72837000	Weak transcription	Fetal Heart	heart
2	chr2:72831000-72839800	Weak transcription	Brain Substantia Nigra	brain
3	chr2:72831000-72841400	Weak transcription	Brain Anterior Caudate	brain
4	chr2:72831000-72841400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr2:72831400-72840000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:72831800-72841800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:72832000-72837400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:72834000-72843600	Weak transcription	Fetal Intestine Small	intestine

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