Variant report

Variant	rs6740390
Chromosome Location	chr2:72877166-72877167
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10180259	1.00[ASN][1000 genomes]
rs10496184	0.85[CEU][hapmap]
rs10496185	1.00[CEU][hapmap]
rs11126369	0.85[CEU][hapmap]
rs11126378	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11675268	0.84[CEU][hapmap]
rs11689339	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11689707	1.00[CEU][hapmap]
rs11884162	0.85[CEU][hapmap]
rs11884266	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11892598	1.00[CEU][hapmap]
rs1562361	0.84[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008186	0.85[CEU][hapmap]
rs17008208	0.84[CEU][hapmap]
rs17008241	1.00[CEU][hapmap]
rs17008293	1.00[CEU][hapmap]
rs17008315	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17008360	0.85[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008369	0.85[CEU][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17008371	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17263172	0.85[CEU][hapmap]
rs1949377	0.85[CEU][hapmap]
rs55642420	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56058174	0.84[AMR][1000 genomes]
rs57192957	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59216875	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60284189	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60314340	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61736520	0.82[AMR][1000 genomes]
rs66469454	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66509842	1.00[ASN][1000 genomes]
rs66794803	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6713143	0.84[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6713712	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6720889	0.84[CEU][hapmap]
rs6736649	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6739768	1.00[CEU][hapmap]
rs6749495	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6754072	1.00[ASN][1000 genomes]
rs6756070	1.00[CEU][hapmap]
rs67869181	0.95[EUR][1000 genomes]
rs67926386	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7557942	0.84[CEU][hapmap]
rs7577244	0.85[CEU][hapmap]
rs7604083	1.00[CEU][hapmap]
rs7604818	0.92[CEU][hapmap]
rs764766	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72840200-72878600	Weak transcription	Aorta	Aorta
2	chr2:72858400-72904000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:72866200-72877400	Weak transcription	Fetal Heart	heart
4	chr2:72866800-72902600	Weak transcription	Left Ventricle	heart
5	chr2:72873000-72903800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:72875000-72877400	Weak transcription	Brain Substantia Nigra	brain
7	chr2:72876000-72883000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:72876200-72877400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:72876800-72877400	Enhancers	Ovary	ovary

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