Variant report

Variant	rs11884266
Chromosome Location	chr2:72846541-72846542
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72830279..72832470-chr2:72845355..72847337,2	K562	blood:
2	chr2:72844116..72846713-chr2:72857224..72859116,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10496185	0.92[CEU][hapmap];0.82[YRI][hapmap];0.84[EUR][1000 genomes]
rs10496187	0.93[YRI][hapmap]
rs11126369	0.84[YRI][hapmap]
rs11126378	0.92[CEU][hapmap];0.92[YRI][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11689339	0.92[CEU][hapmap];0.96[YRI][hapmap];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11689707	0.92[CEU][hapmap];0.86[YRI][hapmap]
rs11892598	0.92[CEU][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12619565	0.86[YRI][hapmap]
rs1562361	0.96[YRI][hapmap];0.87[AMR][1000 genomes]
rs17008241	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs17008293	0.93[CEU][hapmap];0.86[YRI][hapmap];0.85[EUR][1000 genomes]
rs17008315	1.00[CEU][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17008369	0.93[YRI][hapmap];0.82[AMR][1000 genomes]
rs17008371	0.96[YRI][hapmap];0.82[AMR][1000 genomes]
rs2068410	0.86[YRI][hapmap]
rs4597553	0.86[YRI][hapmap]
rs55642420	0.82[AMR][1000 genomes]
rs56058174	0.82[AMR][1000 genomes]
rs57192957	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59216875	0.82[AMR][1000 genomes]
rs60314340	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60325013	0.84[EUR][1000 genomes]
rs66469454	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs66794803	0.82[AMR][1000 genomes]
rs6711701	0.84[EUR][1000 genomes]
rs6713143	0.92[YRI][hapmap];0.87[AMR][1000 genomes]
rs6713712	0.93[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6716335	0.93[YRI][hapmap]
rs6736649	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6739768	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs6740390	0.92[CEU][hapmap]
rs6749495	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67535553	0.83[EUR][1000 genomes]
rs6756070	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs6761253	0.93[YRI][hapmap]
rs67869181	0.83[EUR][1000 genomes]
rs67970313	0.85[EUR][1000 genomes]
rs7573417	0.87[EUR][1000 genomes]
rs7593084	0.92[YRI][hapmap]
rs7604083	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs7604818	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs7607226	0.93[YRI][hapmap]
rs764766	0.92[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv834257	chr2:72701083-72853548	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72840000-72854400	Weak transcription	Ovary	ovary
2	chr2:72840200-72878600	Weak transcription	Aorta	Aorta
3	chr2:72842000-72847000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:72842200-72849800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:72843800-72847000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:72843800-72866200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:72844200-72854400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr2:72844400-72847800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr2:72845000-72862400	Weak transcription	Fetal Intestine Small	intestine
10	chr2:72845800-72847200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:72845800-72847400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr2:72846000-72847000	Enhancers	Brain Hippocampus Middle	brain
13	chr2:72846000-72847200	Enhancers	Brain Substantia Nigra	brain
14	chr2:72846000-72847400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:72846200-72847200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr2:72846200-72847200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr2:72846200-72854000	Weak transcription	Fetal Lung	lung
18	chr2:72846400-72846600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr2:72846400-72847400	Enhancers	HUES64 Cell Line	embryonic stem cell

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