Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10496185	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11689707	0.82[EUR][1000 genomes]
rs11884266	0.87[EUR][1000 genomes]
rs11892598	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17008241	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17008293	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17008315	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs57192957	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs58967293	0.83[EUR][1000 genomes]
rs60325013	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60580301	0.83[EUR][1000 genomes]
rs6711701	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6713712	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6739768	0.95[EUR][1000 genomes]
rs67491855	0.80[EUR][1000 genomes]
rs6749495	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs67535553	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6756070	0.93[EUR][1000 genomes]
rs67970313	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72845185	0.85[EUR][1000 genomes]
rs7604083	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7604818	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs764766	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv582208	chr2:72690622-72835886	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv834257	chr2:72701083-72853548	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72809200-72833800	Weak transcription	Left Ventricle	heart
2	chr2:72820400-72823400	Weak transcription	Psoas Muscle	Psoas
3	chr2:72821400-72823200	Weak transcription	Ovary	ovary
4	chr2:72822800-72823200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr2:72823000-72823200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:72823000-72823600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search: